TkA04G010370 | RubberDandelionOmics

Gene overview

TkA04G010370

Reference: TK1151 Chr: Chr04 Coordinates: 2466487-2470663 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1333 bp · TkA04G010370|TK1151|cDNA

GAGGAAATGTATAATTAGCAAATGCCTGAAGGAATCTACAACGGTTCCTCTCTCCAGAACCCCTCAACTGAATCAGGCGAAATGAGAGCGAAGTTCAATCAGAATCGGTGGAATTCGCCATCCAAAGTCGCATCTCACTTCGGAACAAGTGGTATTGCTGTTGCAACAGCCACCGGCATCACACATCCATTAGATGTTCTCAAAGTTAGACTCCAAATGCAACTTGTGGGACAAAAAGGTCCACTAATTGGAATGGGACA...

CDS

Download CDS FASTA

957 bp · TkA04G010370|TK1151|CDS

ATGCCTGAAGGAATCTACAACGGTTCCTCTCTCCAGAACCCCTCAACTGAATCAGGCGAAATGAGAGCGAAGTTCAATCAGAATCGGTGGAATTCGCCATCCAAAGTCGCATCTCACTTCGGAACAAGTGGTATTGCTGTTGCAACAGCCACCGGCATCACACATCCATTAGATGTTCTCAAAGTTAGACTCCAAATGCAACTTGTGGGACAAAAAGGTCCACTAATTGGAATGGGACAAACTTTTGTTGGAGTTGTTAA...

Protein

Download Protein FASTA

318 aa · TkA04G010370|TK1151|PROTEIN

MPEGIYNGSSLQNPSTESGEMRAKFNQNRWNSPSKVASHFGTSGIAVATATGITHPLDVLKVRLQMQLVGQKGPLIGMGQTFVGVVKKEGAGSLYLGLSPALTRSVLYGGLRLGLYEPCKHFCELAFESTNIFMKIASGAVSGAFATLLTNPVEVLKVRLQMNPNASKGAISEMQRIVRKEGVTALWKGVGPAMARAGALTASQLATYDEFKRVLVKRTPLEEGFYLHFMSSTVAGLVSTLITTPMDMVKTRLMLQRESM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G010370`
TK1151 ID	TkA04G010370
OH-1004 ID	LXL04_036375
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	35.600
Protein coverage (%)	TK1151 86.792 / OH-1004 94.389 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G010370

Location Chr04:2466487-2470663 (+)

Description Similar to PUMP2: Mitochondrial uncoupling protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g54110`	PUMPS are mitochondrial transporter proteins that create proton leaks across the inner mitochondrial membrane, thus uncoupling oxidative phosphorylation.	Functional reconstitution of Arabidopsis thaliana plant uncoupling mitochondrial protein (AtPUMP1) expressed in Escherichia coli.2001 · DOI: 10.1016/s0014-5793(01)02835-6 Overexpression of plant uncoupling mitochondrial protein in transgenic tobacco increases tolerance to oxidative stress.2003 · DOI: 10.1023/a:1024603530043 Mitochondrial uncoupling protein is required for efficient photosynthesis.2006 · DOI: 10.1073/pnas.0607751103 Mutational analysis of Arabidopsis thaliana plant uncoupling mitochondrial protein.2007 · DOI: 10.1016/j.bbabio.2007.09.005 An Arabidopsis mitochondrial uncoupling protein confers tolerance to drought and salt stress in transgenic tobacco plants.2011 · DOI: 10.1371/journal.pone.0023776

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036375 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0003333 amino acid transmembrane transport Biological Process

GO:0009853 photorespiration Biological Process

GO:0015979 photosynthesis Biological Process

GO:0055085 transmembrane transport Biological Process

GO:1990542 mitochondrial transmembrane transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

KEGG gene cross-reference

ath:AT3G54110

ath:AT5G58970

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.914

Rank 1 · TkA04G010370 · TK1151

Cytoplasm0.031

Rank 2 · TkA04G010370 · TK1151

Nucleus0.024

Rank 3 · TkA04G010370 · TK1151

Cell membrane0.019

Rank 4 · TkA04G010370 · TK1151

Plastid0.014

Rank 5 · TkA04G010370 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00153Mito_carr34-122 aa

PF00153Mito_carr131-217 aa

PF18405SLC25_like132-164 aa

PF18405SLC25_like217-263 aa

PF03824NicO217-253 aa

PF00153Mito_carr224-312 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G010370	`PF00153`	Mito_carr	34	122	1.5e-66	220.9
TkA04G010370	`PF00153`	Mito_carr	131	217	1.5e-66	220.9
TkA04G010370	`PF18405`	SLC25_like	132	164	0.00019	21.3
TkA04G010370	`PF18405`	SLC25_like	217	263	0.00019	21.3
TkA04G010370	`PF03824`	NicO	217	253	0.075	13.1
TkA04G010370	`PF00153`	Mito_carr	224	312	1.5e-66	220.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O81845`	Arabidopsis thaliana	sp\|O81845\|PUMP1_ARATH Mitochondrial uncoupling protein 1	35.000%	Swiss-Prot	Medium

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