TkA04G008860 | RubberDandelionOmics

Gene overview

TkA04G008860

Reference: TK1151 Chr: Chr04 Coordinates: 2130037-2130345 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

309 bp · TkA04G008860|TK1151|cDNA

ATGGACAAGATACAAACTTTGACATCAGAGAATGGAGTCGTGATATTCAGCAAGAGTACCTGTTGTTTATGCTACGCTGTGACTATTCTGTTCCAAGAACTTGGGGTTGAACCGGTGGTTCATGAGATGGACCATGAACCAGATGGTTGGGAGATCGAGCAGGCTCTGTTAACCCAAGGTCGCAACTCTTCTCCTGTTCCGGCTGTGTTCATAGGGGGAAAGCTCATTGGGTCCACCAATGAGGTCATGTCCCTTCACCT...

CDS

Download CDS FASTA

309 bp · TkA04G008860|TK1151|CDS

ATGGACAAGATACAAACTTTGACATCAGAGAATGGAGTCGTGATATTCAGCAAGAGTACCTGTTGTTTATGCTACGCTGTGACTATTCTGTTCCAAGAACTTGGGGTTGAACCGGTGGTTCATGAGATGGACCATGAACCAGATGGTTGGGAGATCGAGCAGGCTCTGTTAACCCAAGGTCGCAACTCTTCTCCTGTTCCGGCTGTGTTCATAGGGGGAAAGCTCATTGGGTCCACCAATGAGGTCATGTCCCTTCACCT...

Protein

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102 aa · TkA04G008860|TK1151|PROTEIN

MDKIQTLTSENGVVIFSKSTCCLCYAVTILFQELGVEPVVHEMDHEPDGWEIEQALLTQGRNSSPVPAVFIGGKLIGSTNEVMSLHLSGALIPMLRPYQTLA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G008860`
TK1151 ID	TkA04G008860
OH-1004 ID	LXL04_037040
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G008860

Location Chr04:2130037-2130345 (-)

Description Similar to GRXC13: Glutaredoxin-C13

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g47880`	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase.	No verified direct reference in this release
`At2g30540`	May only reduce GSH-thiol disulfides, but not protein disulfides.	No verified direct reference in this release
`At3g62960`	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase.	No verified direct reference in this release
`At1g06830`	May only reduce GSH-thiol disulfides, but not protein disulfides.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os12g0538600`	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037040 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006995 cellular response to nitrogen starvation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0046872 metal ion binding Molecular Function

GO:0051537 2 iron, 2 sulfur cluster binding Molecular Function

KEGG gene cross-reference

ath:AT1G06830

ath:AT2G30540

ath:AT2G47880

ath:AT3G62960

dosa:Os12g0538600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.609

Rank 1 · TkA04G008860 · TK1151

Nucleus0.316

Rank 2 · TkA04G008860 · TK1151

Cell membrane0.123

Rank 3 · TkA04G008860 · TK1151

Mitochondrion0.083

Rank 4 · TkA04G008860 · TK1151

Endoplasmic reticulum0.065

Rank 5 · TkA04G008860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14441OTT_1508_deam12-28 aa

PF00462Glutaredoxin13-76 aa

PF05768Glrx-like13-34 aa

PF13409GST_N_221-82 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G008860	`PF14441`	OTT_1508_deam	12	28	0.17	12.6
TkA04G008860	`PF00462`	Glutaredoxin	13	76	5.8e-11	43.2
TkA04G008860	`PF05768`	Glrx-like	13	34	0.17	13.0
TkA04G008860	`PF13409`	GST_N_2	21	82	0.033	15.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O82255`	Arabidopsis thaliana	sp\|O82255\|GRC13_ARATH Glutaredoxin-C13	64.400%	Swiss-Prot	High
`O04341`	Arabidopsis thaliana	sp\|O04341\|GRXS9_ARATH Monothiol glutaredoxin-S9	64.600%	Swiss-Prot	High
`Q9LYC5`	Arabidopsis thaliana	sp\|Q9LYC5\|GRC14_ARATH Glutaredoxin-C14	61.000%	Swiss-Prot	High
`Q9M9Y9`	Arabidopsis thaliana	sp\|Q9M9Y9\|GRS11_ARATH Monothiol glutaredoxin-S11	63.300%	Swiss-Prot	High
`Q0IMV4`	Oryza sativa subsp. japonica	sp\|Q0IMV4\|GRC14_ORYSJ Putative glutaredoxin-C14	57.300%	Swiss-Prot	High

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