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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G007310
Reference: TK1151 Chr: Chr04 Coordinates: 1739007-1739953 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

864 bp · TkA04G007310|TK1151|cDNA

ATGGACTCGAAGGAAGATACGTCTCTCTCAGGTTTTTCTTCTGTTTCTTCCGATAACATCGAAACTGTTAACGAAACGAATGGTTTGAAGTCAGTTGACAAAGTTGATAATAATAAAGCTAGTAGTCTGAACGTTACTTCCGATGACGAGGGTTTTGCTAGTGGTCAGGAGGAGGCTTCTGAAACTCCTTTGCCGAAGGTTGAATCATTGCCTGTGATTGATGAGGTTGTTAAAGGTAACTTAGGTTTGGTGGAGGAGGT...

CDS

Download CDS FASTA

864 bp · TkA04G007310|TK1151|CDS

ATGGACTCGAAGGAAGATACGTCTCTCTCAGGTTTTTCTTCTGTTTCTTCCGATAACATCGAAACTGTTAACGAAACGAATGGTTTGAAGTCAGTTGACAAAGTTGATAATAATAAAGCTAGTAGTCTGAACGTTACTTCCGATGACGAGGGTTTTGCTAGTGGTCAGGAGGAGGCTTCTGAAACTCCTTTGCCGAAGGTTGAATCATTGCCTGTGATTGATGAGGTTGTTAAAGGTAACTTAGGTTTGGTGGAGGAGGT...

Protein

Download Protein FASTA

287 aa · TkA04G007310|TK1151|PROTEIN

MDSKEDTSLSGFSSVSSDNIETVNETNGLKSVDKVDNNKASSLNVTSDDEGFASGQEEASETPLPKVESLPVIDEVVKGNLGLVEEVADENRESDEKMNSNAVVKEEVVEGIEGDKVTESKRDVVDESVSKAVNSDEVKSGTPEEGEKEVVVANGVKLTPEGDAVVEEIKVDTPVPGVAVVSNIEDVEEDDEDEEVLLVGGPDDTNSVVEEPELESFGADDVKITSDLESVGANDVKITSESDSVVEAVDVDLPVAGVPG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G007310
TK1151 IDTkA04G007310
OH-1004 IDLXL04_037059
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)88.600
Protein coverage (%)TK1151 93.728 / OH-1004 21.806
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G007310
LocationChr04:1739007-1739953 (-)
DescriptionSimilar to TOC159: Translocase of chloroplast 159, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_037059 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0045036 protein targeting to chloroplast Biological Process
GO:0045037 protein import into chloroplast stroma Biological Process
GO:0005634 nucleus Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009536 plastid Cellular Component
GO:0009707 chloroplast outer membrane Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:0061927 TOC-TIC supercomplex I Cellular Component
GO:0003924 GTPase activity Molecular Function
GO:0004888 transmembrane signaling receptor activity Molecular Function
GO:0004930 G protein-coupled receptor activity Molecular Function
KEGG gene cross-reference
ath:AT2G16640
ath:AT3G16620
ath:AT4G02510
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.381
Rank 1 · TkA04G007310 · TK1151
Nucleus0.291
Rank 2 · TkA04G007310 · TK1151
Cell membrane0.248
Rank 3 · TkA04G007310 · TK1151
Endoplasmic reticulum0.120
Rank 4 · TkA04G007310 · TK1151
Golgi apparatus0.074
Rank 5 · TkA04G007310 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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