TkA04G006470 | RubberDandelionOmics

Gene overview

TkA04G006470

Reference: TK1151 Chr: Chr04 Coordinates: 1535681-1536142 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

462 bp · TkA04G006470|TK1151|cDNA

ATGCAACCGTCCTGTTTCAGTCCCCGATTCATGAGCAAGCCGAAGAAGGAAAAGAAATCAAAACCAAAAACAGAGATATACAACCGGGCGATCCCGTTACCGGAGCTGATTGCAGAGCCGACAAACGCCCGATCGATGTCGTTTGTCGGGACACACGAGTATCTGGCGCCGGAGATCATCAAGGGTGAAGGGCATGGGAGCGCTGTTGATCCGTTGAGGTTTCCGGAAACGCCGTCGGTGAGCTTTGCAGCGAGGGATTT...

CDS

Download CDS FASTA

462 bp · TkA04G006470|TK1151|CDS

ATGCAACCGTCCTGTTTCAGTCCCCGATTCATGAGCAAGCCGAAGAAGGAAAAGAAATCAAAACCAAAAACAGAGATATACAACCGGGCGATCCCGTTACCGGAGCTGATTGCAGAGCCGACAAACGCCCGATCGATGTCGTTTGTCGGGACACACGAGTATCTGGCGCCGGAGATCATCAAGGGTGAAGGGCATGGGAGCGCTGTTGATCCGTTGAGGTTTCCGGAAACGCCGTCGGTGAGCTTTGCAGCGAGGGATTT...

Protein

Download Protein FASTA

153 aa · TkA04G006470|TK1151|PROTEIN

MQPSCFSPRFMSKPKKEKKSKPKTEIYNRAIPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDPLRFPETPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHLFFQSVNWALIRCATPPDIPIPSPDKVEVKPPGSYVEIDFF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G006470`
TK1151 ID	TkA04G006470
OH-1004 ID	LXL04_031087
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	97.200
Protein coverage (%)	TK1151 93.464 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G006470

Location Chr04:1535681-1536142 (+)

Description Similar to Protein kinase PVPK-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g27580`	Protein kinase that regulates the auxin transport activity of PIN auxin efflux facilitators by direct phosphorylation.	D6PK AGCVIII kinases are required for auxin transport and phototropic hypocotyl bending in Arabidopsis.2013 · DOI: 10.1105/tpc.113.111484
`At5g55910`	Protein kinase that regulates the auxin transport activity of PIN auxin efflux facilitators by direct phosphorylation.	The polarly localized D6 PROTEIN KINASE is required for efficient auxin transport in Arabidopsis thaliana.2009 · DOI: 10.1242/dev.028365 D6PK AGCVIII kinases are required for auxin transport and phototropic hypocotyl bending in Arabidopsis.2013 · DOI: 10.1105/tpc.113.111484 Arabidopsis D6PK is a lipid domain-dependent mediator of root epidermal planar polarity.2015 · DOI: 10.1038/nplants.2015.162
`At4g26610`	Protein kinase that regulates the auxin transport activity of PIN auxin efflux facilitators by direct phosphorylation.	D6PK AGCVIII kinases are required for auxin transport and phototropic hypocotyl bending in Arabidopsis.2013 · DOI: 10.1105/tpc.113.111484

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2YBX5`	May play a role in the regulation of metabolism and signal transduction processes.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031087 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0009555 pollen development Biological Process

GO:0009638 phototropism Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0010540 basipetal auxin transport Biological Process

GO:0062075 pollen aperture formation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004672 protein kinase activity Molecular Function

KEGG gene cross-reference

ath:AT3G27580

ath:AT5G47750

dosa:Os06g0291600

osa:4340792

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.531

Rank 1 · TkA04G006470 · TK1151

Nucleus0.485

Rank 2 · TkA04G006470 · TK1151

Mitochondrion0.075

Rank 3 · TkA04G006470 · TK1151

Cell membrane0.072

Rank 4 · TkA04G006470 · TK1151

Endoplasmic reticulum0.047

Rank 5 · TkA04G006470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase45-70 aa

PF00069Pkinase74-115 aa

PF21359zf_topless111-132 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G006470	`PF00069`	Pkinase	45	70	4.9e-08	33.4
TkA04G006470	`PF00069`	Pkinase	74	115	4.9e-08	33.4
TkA04G006470	`PF21359`	zf_topless	111	132	0.17	12.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q05999`	Arabidopsis thaliana	sp\|Q05999\|D6KL3_ARATH Serine/threonine-protein kinase D6PKL3	57.100%	Swiss-Prot	High
`Q9FG74`	Arabidopsis thaliana	sp\|Q9FG74\|D6PK_ARATH Serine/threonine-protein kinase D6PK	56.600%	Swiss-Prot	High
`Q9SUA3`	Arabidopsis thaliana	sp\|Q9SUA3\|D6KL1_ARATH Serine/threonine-protein kinase D6PKL1	57.100%	Swiss-Prot	High
`A2YBX5`	Oryza sativa subsp. indica	sp\|A2YBX5\|G11A_ORYSI Protein kinase G11A	53.700%	Swiss-Prot	High

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