TkA04G002930 | RubberDandelionOmics

Gene overview

TkA04G002930

Reference: TK1151 Chr: Chr04 Coordinates: 728520-731075 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2556 bp · TkA04G002930|TK1151|cDNA

ATGAACCCTGGTTTGATTCCCCTGATTGTATATCTCTCTCTTCTTTTCAATACCCTCAGCGAGGCTCAGCCGTCCTCCGCCGGCCCGCGTCCATTAGCCTTAAACTGCGGCTCAAAAGACGGTGGCCATGATGCCGACAATCGAAAATGGGAATCAGATGATAAATACCTGGTGGCCGCCGACAAATCGGTTTCATCAACCGCCTTAACCCATGAGGCGTCGCTTTGCTCCGACGTACCGTACATGACCGCCAGGATATT...

CDS

Download CDS FASTA

2556 bp · TkA04G002930|TK1151|CDS

ATGAACCCTGGTTTGATTCCCCTGATTGTATATCTCTCTCTTCTTTTCAATACCCTCAGCGAGGCTCAGCCGTCCTCCGCCGGCCCGCGTCCATTAGCCTTAAACTGCGGCTCAAAAGACGGTGGCCATGATGCCGACAATCGAAAATGGGAATCAGATGATAAATACCTGGTGGCCGCCGACAAATCGGTTTCATCAACCGCCTTAACCCATGAGGCGTCGCTTTGCTCCGACGTACCGTACATGACCGCCAGGATATT...

Protein

Download Protein FASTA

851 aa · TkA04G002930|TK1151|PROTEIN

MNPGLIPLIVYLSLLFNTLSEAQPSSAGPRPLALNCGSKDGGHDADNRKWESDDKYLVAADKSVSSTALTHEASLCSDVPYMTARIFKGETSYKFNVNSTSRYIIRLHFYPSNYPDYNISDSYSVVTTGTMTLLRNFSAFITAEALSQAYLIREYSLAAFNSDSITLTFKPADKSFAFVNGIELITEPELFDDKAGLVGVADTAGTIDGVSSNMQTMFRLNVGGQYIHPKNDSGGLMRSWYDDMPYMFGAGTISHVGNVT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G002930`
TK1151 ID	TkA04G002930
OH-1004 ID	LXL04_037104
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G002930

Location Chr04:728520-731075 (-)

Description Similar to ANX2: Receptor-like protein kinase ANXUR2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g28680`	Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.	No verified direct reference in this release
`At3g04690`	Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.	No verified direct reference in this release
`At3g51550`	May regulate MLO7 polarization in female gametophyte synergid cells to control pollen tube growth and male gamete delivery during fertilization.	FERONIA receptor-like kinase regulates RHO GTPase signaling of root hair development.2010 · DOI: 10.1073/pnas.1005366107
`At5g39000`	Putative receptor-like protein kinase At5g39000.	No verified direct reference in this release
`At5g54380`	Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.	A receptor-like kinase mediates the response of Arabidopsis cells to the inhibition of cellulose synthesis.2007 · DOI: 10.1016/j.cub.2007.05.018 Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037104 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009723 response to ethylene Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0010038 response to metal ion Biological Process

GO:0010118 stomatal movement Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0030308 negative regulation of cell growth Biological Process

KEGG gene cross-reference

ath:AT3G04690

ath:AT3G51550

ath:AT5G28680

ath:AT5G39000

ath:AT5G54380

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.822

Rank 1 · TkA04G002930 · TK1151

Endoplasmic reticulum0.088

Rank 2 · TkA04G002930 · TK1151

Cytoplasm0.085

Rank 3 · TkA04G002930 · TK1151

Nucleus0.046

Rank 4 · TkA04G002930 · TK1151

Lysosome / Vacuole0.046

Rank 5 · TkA04G002930 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11721Malectin32-166 aa

PF12819Malectin_like34-394 aa

PF11721Malectin274-362 aa

PF00069Pkinase517-782 aa

PF07714PK_Tyr_Ser-Thr519-728 aa

PF03109ABC1519-570 aa

PF03109ABC1627-675 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G002930	`PF11721`	Malectin	32	166	6.4e-14	53.0
TkA04G002930	`PF12819`	Malectin_like	34	394	1.2e-27	97.8
TkA04G002930	`PF11721`	Malectin	274	362	6.4e-14	53.0
TkA04G002930	`PF00069`	Pkinase	517	782	4.9e-44	151.4
TkA04G002930	`PF07714`	PK_Tyr_Ser-Thr	519	728	3.1e-46	158.5
TkA04G002930	`PF03109`	ABC1	519	570	0.0052	16.7
TkA04G002930	`PF03109`	ABC1	627	675	0.0052	16.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q3E8W4`	Arabidopsis thaliana	sp\|Q3E8W4\|ANX2_ARATH Receptor-like protein kinase ANXUR2	54.700%	Swiss-Prot	High
`Q9SR05`	Arabidopsis thaliana	sp\|Q9SR05\|ANX1_ARATH Receptor-like protein kinase ANXUR1	55.100%	Swiss-Prot	High
`Q9SCZ4`	Arabidopsis thaliana	sp\|Q9SCZ4\|FERON_ARATH Receptor-like protein kinase FERONIA	49.600%	Swiss-Prot	Medium
`Q9FID8`	Arabidopsis thaliana	sp\|Q9FID8\|Y5900_ARATH Putative receptor-like protein kinase At5g39000	43.200%	Swiss-Prot	Medium
`Q9LK35`	Arabidopsis thaliana	sp\|Q9LK35\|THE1_ARATH Receptor-like protein kinase THESEUS 1	41.000%	Swiss-Prot	Medium

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