Gene Card
Gene overview
cDNA / CDS / Protein Sequences
630 bp · TkA04G002520|TK1151|cDNA
ATGGATGGCGACGACTATAAACAGAGGAAGAGAGCATCGGATGGATTTGGAAGAGAAAATGGGAGGGTTCCTACCTGGAAGAGAAAATGGGTTTTGTATGGACCTACTCCGGAAGAAAGTCAACCTCAAAGATATGTATATTGTATTTGTTCACCTTTTAGAGCTATGAATTCCAAGTATGTCAGTGTATTTCAAGGAGAGTTGAAAGTAAACAAGCTTCGTGCTCATACAACTCATCGCATACGGGTTCTTAACAAAAG...
630 bp · TkA04G002520|TK1151|CDS
ATGGATGGCGACGACTATAAACAGAGGAAGAGAGCATCGGATGGATTTGGAAGAGAAAATGGGAGGGTTCCTACCTGGAAGAGAAAATGGGTTTTGTATGGACCTACTCCGGAAGAAAGTCAACCTCAAAGATATGTATATTGTATTTGTTCACCTTTTAGAGCTATGAATTCCAAGTATGTCAGTGTATTTCAAGGAGAGTTGAAAGTAAACAAGCTTCGTGCTCATACAACTCATCGCATACGGGTTCTTAACAAAAG...
Protein
Download Protein FASTA209 aa · TkA04G002520|TK1151|PROTEIN
MDGDDYKQRKRASDGFGRENGRVPTWKRKWVLYGPTPEESQPQRYVYCICSPFRAMNSKYVSVFQGELKVNKLRAHTTHRIRVLNKRMQPLSVQIWSVEGVHHYHIARFHHPYHHPPPREHCVYCQPALQARPEGRCIASSKCKILSKLFYCCYHEDKRTKNNSSNLCFWKDERRMIYIKHHIDDKRLQNTMKRIGLNTIPAIEEVNIF
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA04G002520 |
|---|---|
| TK1151 ID | TkA04G002520 |
| OH-1004 ID | LXL04_000285 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 84.600 |
| Protein coverage (%) | TK1151 12.440 / OH-1004 14.857Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA04G002520 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:643198-650579 (-) | |||||||||
| Description | Similar to BTF3: Basic transcription factor 3 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006351 DNA-templated transcription Biological Process GO:0015031 protein transport Biological Process GO:1905551 negative regulation of protein localization to endoplasmic reticulum Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005829 cytosol Cellular Component GO:0005854 nascent polypeptide-associated complex Cellular Component GO:0003723 RNA binding Molecular Function GO:0003729 mRNA binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G17880 ath:AT1G73230 hsa:689 mmu:218490 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF15759TMEM108141-182 aaPF28413At5g65660_helical146-158 aaPF01849NAC185-209 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA04G002520 | PF15759 | TMEM108 | 141 | 182 | 0.19 | 11.4 |
| TkA04G002520 | PF28413 | At5g65660_helical | 146 | 158 | 0.099 | 13.0 |
| TkA04G002520 | PF01849 | NAC | 185 | 209 | 5.3e-06 | 27.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.