TkA04G000250 | RubberDandelionOmics

Gene overview

TkA04G000250

Reference: TK1151 Chr: Chr04 Coordinates: 68772-70159 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

904 bp · TkA04G000250|TK1151|cDNA

GTCGCAGTGATCGGAGTCAAAGTTCATCACCGGAGTTTTTCATAACCGAAAGAAAGTTCTCAATCGTAGACATACAATTTCAAACTCACATGCACGCATCTCCTCGTGTATTAATACCGGAATATTCATCTGATGGATCCTTCAATAATGAAGTTCCTTGAAGAAGACGAGGATGAAACAATGCATTCAGGGGCTGACGTTGAGGCATTCACTGCTGCTCTAAACAGAGATATCGAAGGGGACACCATTTCAACATCTCA...

CDS

Download CDS FASTA

474 bp · TkA04G000250|TK1151|CDS

ATGGATCCTTCAATAATGAAGTTCCTTGAAGAAGACGAGGATGAAACAATGCATTCAGGGGCTGACGTTGAGGCATTCACTGCTGCTCTAAACAGAGATATCGAAGGGGACACCATTTCAACATCTCAGCCTCCCACTACCACAGATGCAGGCGGAGGTTTATCTCAAGGAACGAATCATACTCCAAGCCAGCTGTTTCAACAATGGCAATCTGCCAACCGTGAAGGAAACACCAATTACTCTAACGAAGAGGAAGTTAA...

Protein

Download Protein FASTA

157 aa · TkA04G000250|TK1151|PROTEIN

MDPSIMKFLEEDEDETMHSGADVEAFTAALNRDIEGDTISTSQPPTTTDAGGGLSQGTNHTPSQLFQQWQSANREGNTNYSNEEEVKPKIHEQQSSAMEVNRHGSGSEVQHPPNDTSRVPSEPTRPQDDQHKVHTSQTMNTVKTPRPRTKFIKETRK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G000250`
TK1151 ID	TkA04G000250
OH-1004 ID	LXL04_008010
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.600
Protein coverage (%)	TK1151 92.357 / OH-1004 16.880 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G000250

Location Chr04:68772-70159 (-)

Description Similar to TAF4B: Transcription initiation factor TFIID subunit 4b

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g43130`	TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008010 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006282 regulation of DNA repair Biological Process

GO:0006352 DNA-templated transcription initiation Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0006366 transcription by RNA polymerase II Biological Process

GO:0006367 transcription initiation at RNA polymerase II promoter Biological Process

GO:0007283 spermatogenesis Biological Process

GO:0042789 mRNA transcription by RNA polymerase II Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0051123 RNA polymerase II preinitiation complex assembly Biological Process

GO:0060261 positive regulation of transcription initiation by RNA polymerase II Biological Process

GO:0000785 chromatin Cellular Component

GO:0001650 fibrillar center Cellular Component

KEGG gene cross-reference

ath:AT1G27720

ath:AT5G43130

dme:Dmel_CG5444

hsa:6874

hsa:6875

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.869

Rank 1 · TkA04G000250 · TK1151

Cytoplasm0.250

Rank 2 · TkA04G000250 · TK1151

Cell membrane0.037

Rank 3 · TkA04G000250 · TK1151

Mitochondrion0.030

Rank 4 · TkA04G000250 · TK1151

Endoplasmic reticulum0.019

Rank 5 · TkA04G000250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19779DUF626480-148 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G000250	`PF19779`	DUF6264	80	148	4.7	8.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4K4L7`	Arabidopsis thaliana	sp\|F4K4L7\|TAF4B_ARATH Transcription initiation factor TFIID subunit 4b	47.100%	Swiss-Prot	Medium

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