TkA03G617970 | RubberDandelionOmics

Gene overview

TkA03G617970

Reference: TK1151 Chr: Chr03 Coordinates: 157013719-157021032 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4497 bp · TkA03G617970|TK1151|cDNA

CATTTAAGTCAAAGACTGCTTAATATCTGTCGTTTGGTCGATCCGGTTTAAGATTTTCGTTTTAAAACGTCTGGTTTTAAAGCTTTTAACATTTGATACAGGGTCGCATCTTTCATTTTTTTGAATTGTTCATCAAAACCCAAGAAAAACCTACATGCCCTCATTACTCATATCATTCTTTTACACTCCCAAGTCCCAAGTTCCTCGCAATTGCATCTTCCCTGTTAATCCTCCATCATCGCATTGCAGGGTTTTGATTT...

CDS

Download CDS FASTA

1452 bp · TkA03G617970|TK1151|CDS

ATGTTAGAGTATAATGAAGTTTTGTATCCTACAAAAAGAATTGGTCACTTGCCTGGTATTGACGTTGGTTATCAATTCTATTCACGAGCGGAAATGGTTGCCTTGGGTTTTCATAGTCACTGGCTTAATGACATTGATTATATGGGAGAATCGTACGTGAAAATGGAGGAGTTGAAGGGGTACACATTTCCATTAGCTGTAGCACTTGTATTGTCCGACTCTGGTCAATGCGAAGGTGATGATATTGTTTATACCGCTCA...

Protein

Download Protein FASTA

483 aa · TkA03G617970|TK1151|PROTEIN

MLEYNEVLYPTKRIGHLPGIDVGYQFYSRAEMVALGFHSHWLNDIDYMGESYVKMEELKGYTFPLAVALVLSDSGQCEGDDIVYTAQGGNDVMVNIHQQQIPCADFALKNSMEHCIPVRVVGGRTSEHQSSRLYTYQGLYKVSECWPAEGSNTVVYKYLLKRLQGQPYLTTNQVQYSNGRSTRVPVKAPKLVCLDITEGQEDVCIPVINTIDDTIITGFTYTRYNKVLSSLRLPANAEGCECKGNCTDARTCACAKLNGF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G617970`
TK1151 ID	TkA03G617970
OH-1004 ID	LXL04_011759
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 69.597 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G617970

Location Chr03:157013719-157021032 (+)

Description Similar to SUVH4: Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g13960`	Histone methyltransferase.	H3 lysine 9 methylation is maintained on a transcribed inverted repeat by combined action of SUVH6 and SUVH4 methyltransferases.2005 · DOI: 10.1128/mcb.25.23.10507-10515.2005
`At2g22740`	Histone methyltransferase.	Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana.2004 · DOI: 10.1007/s00412-004-0275-7 H3 lysine 9 methylation is maintained on a transcribed inverted repeat by combined action of SUVH6 and SUVH4 methyltransferases.2005 · DOI: 10.1128/mcb.25.23.10507-10515.2005
`At2g35160`	Histone methyltransferase.	No verified direct reference in this release
`At1g73100`	Histone methyltransferase.	No verified direct reference in this release
`At5g04940`	Histone methyltransferase.	Pivotal role of AtSUVH2 in heterochromatic histone methylation and gene silencing in Arabidopsis.2005 · DOI: 10.1038/sj.emboj.7600604

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011759 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0018022 peptidyl-lysine methylation Biological Process

GO:0031048 regulatory ncRNA-mediated heterochromatin formation Biological Process

GO:0032259 methylation Biological Process

GO:0040029 epigenetic regulation of gene expression Biological Process

GO:0044027 negative regulation of gene expression via chromosomal CpG island methylation Biological Process

GO:0000123 histone acetyltransferase complex Cellular Component

GO:0000775 chromosome, centromeric region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005694 chromosome Cellular Component

GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific Molecular Function

GO:0003690 double-stranded DNA binding Molecular Function

GO:0008168 methyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G73100

ath:AT2G22740

ath:AT2G35160

ath:AT5G04940

ath:AT5G13960

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.613

Rank 1 · TkA03G617970 · TK1151

Cytoplasm0.333

Rank 2 · TkA03G617970 · TK1151

Cell membrane0.063

Rank 3 · TkA03G617970 · TK1151

Endoplasmic reticulum0.036

Rank 4 · TkA03G617970 · TK1151

Plastid0.033

Rank 5 · TkA03G617970 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02182SAD_SRA13-166 aa

PF05033Pre-SET96-147 aa

PF05033Pre-SET198-295 aa

PF17907AWS284-296 aa

PF00856SET314-453 aa

PF17907AWS470-481 aa

PF05033Pre-SET471-481 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G617970	`PF02182`	SAD_SRA	13	166	3.5e-31	108.7
TkA03G617970	`PF05033`	Pre-SET	96	147	4.1e-18	66.5
TkA03G617970	`PF05033`	Pre-SET	198	295	4.1e-18	66.5
TkA03G617970	`PF17907`	AWS	284	296	0.52	11.1
TkA03G617970	`PF00856`	SET	314	453	3.4e-19	69.9
TkA03G617970	`PF17907`	AWS	470	481	0.52	11.1
TkA03G617970	`PF05033`	Pre-SET	471	481	4.1e-18	66.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8GZB6`	Arabidopsis thaliana	sp\|Q8GZB6\|SUVH4_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4	52.800%	Swiss-Prot	High
`Q8VZ17`	Arabidopsis thaliana	sp\|Q8VZ17\|SUVH6_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6	37.800%	Swiss-Prot	Medium
`O82175`	Arabidopsis thaliana	sp\|O82175\|SUVH5_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5	35.500%	Swiss-Prot	Medium
`Q9C5P4`	Arabidopsis thaliana	sp\|Q9C5P4\|SUVH3_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3	34.700%	Swiss-Prot	Medium
`Q9FF80`	Arabidopsis thaliana	sp\|Q9FF80\|SUVH1_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1	33.900%	Swiss-Prot	Medium

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