TkA03G604280 | RubberDandelionOmics

Gene overview

TkA03G604280

Reference: TK1151 Chr: Chr03 Coordinates: 153514439-153518888 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3194 bp · TkA03G604280|TK1151|cDNA

TGTAATAGCAGGTTAAAGAAGTGTGATCGACAATGGCTACTTTTGCTAAACCGGAGAATGCTTTGAAACGAGCGGAAGAATTAATAAATGTTGGTCAAAAACAAGATGCACTGCAAGCTCTTCATGATCTCATTACCTCAAAGAGATACAGAGCATGGCAGAAAACACACGAAAAGATCATGTTCAAGTACATTGAGCTTTGTGTTGACATGAGGAGGGGTAGATTTGCCAAAGATGGTCTCATCCAGTACCGTATCATC...

CDS

Download CDS FASTA

2847 bp · TkA03G604280|TK1151|CDS

ATGGCTACTTTTGCTAAACCGGAGAATGCTTTGAAACGAGCGGAAGAATTAATAAATGTTGGTCAAAAACAAGATGCACTGCAAGCTCTTCATGATCTCATTACCTCAAAGAGATACAGAGCATGGCAGAAAACACACGAAAAGATCATGTTCAAGTACATTGAGCTTTGTGTTGACATGAGGAGGGGTAGATTTGCCAAAGATGGTCTCATCCAGTACCGTATCATCTGTCAGCAAGTCAATGTCAACTCCTTAGAAGA...

Protein

Download Protein FASTA

948 aa · TkA03G604280|TK1151|PROTEIN

MATFAKPENALKRAEELINVGQKQDALQALHDLITSKRYRAWQKTHEKIMFKYIELCVDMRRGRFAKDGLIQYRIICQQVNVNSLEEVIKHFMDLSTKRAELARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLMALYADTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLTAPETLHFYLDTRFEQLKVATELELWQEAFRSVEDIYGL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G604280`
TK1151 ID	TkA03G604280
OH-1004 ID	LXL04_011596
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G604280

Location Chr03:153514439-153518888 (-)

Description Similar to TIF3A1: Eukaryotic translation initiation factor 3 subunit A

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g11420`	RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011596 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0001732 formation of cytoplasmic translation initiation complex Biological Process

GO:0002188 translation reinitiation Biological Process

GO:0006413 translational initiation Biological Process

GO:0070373 negative regulation of ERK1 and ERK2 cascade Biological Process

GO:0075522 IRES-dependent viral translational initiation Biological Process

GO:0075525 viral translational termination-reinitiation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005852 eukaryotic translation initiation factor 3 complex Cellular Component

GO:0005874 microtubule Cellular Component

GO:0016282 eukaryotic 43S preinitiation complex Cellular Component

GO:0033290 eukaryotic 48S preinitiation complex Cellular Component

KEGG gene cross-reference

ath:AT4G11420

dre:327515

nta:107760201

rno:292148

zma:542747

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.615

Rank 1 · TkA03G604280 · TK1151

Nucleus0.208

Rank 2 · TkA03G604280 · TK1151

Golgi apparatus0.133

Rank 3 · TkA03G604280 · TK1151

Cell membrane0.106

Rank 4 · TkA03G604280 · TK1151

Lysosome / Vacuole0.070

Rank 5 · TkA03G604280 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22591eIF3a_PCI_TPR-like8-407 aa

PF01399PCI438-509 aa

PF22591eIF3a_PCI_TPR-like585-607 aa

PF22591eIF3a_PCI_TPR-like710-722 aa

PF22591eIF3a_PCI_TPR-like795-844 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G604280	`PF22591`	eIF3a_PCI_TPR-like	8	407	2.4e-135	452.2
TkA03G604280	`PF01399`	PCI	438	509	8.2e-08	33.1
TkA03G604280	`PF22591`	eIF3a_PCI_TPR-like	585	607	2.4e-135	452.2
TkA03G604280	`PF22591`	eIF3a_PCI_TPR-like	710	722	2.4e-135	452.2
TkA03G604280	`PF22591`	eIF3a_PCI_TPR-like	795	844	2.4e-135	452.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LD55`	Arabidopsis thaliana	sp\|Q9LD55\|EIF3A_ARATH Eukaryotic translation initiation factor 3 subunit A	72.200%	Swiss-Prot	High

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