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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G600130
Reference: TK1151 Chr: Chr03 Coordinates: 152387270-152389964 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2122 bp · TkA03G600130|TK1151|cDNA

ACATTCTAGAGAAAGAAACTAAGAAAGCGGTTATTTCCAAGAAACTGTCAATAACTCGTTAGGGTTTGTAAATTCAGTTTTGACTAAAGAAATGTTAAAATGCAAGTATAGACAACGACATTGACGACATTGACTTAAAAGGGATTCTCACAATGGTCATGGGCTCATGGCCGCCCTTCCTCACGCTTTCTTGCTTTCGACACATTTTGACATTTTCCTTTGTTCTATCCTCCATAAAACCAAAACTCTATCTCACAGAT...

CDS

Download CDS FASTA

921 bp · TkA03G600130|TK1151|CDS

ATGCCGGTCAGCATGTTCCAGGTATTTCCAAACTCAAAAATTACTTTCATTACTTCGGATACATCGGTAATCAACAGCAATAACTTCACCGACGACTACGACGACGCGCTTGAAGCTGCCGTGAAAAATTACCAGCTCAACTTCAATTTAAATGCTACCGGTGAACTTGATGAATCCACGGTGAAGCAGATCTTAAAACCGAGATGTGGAGTTGCGGATATAGTTAATGGATCTAGCACTATGAACTCTGGTAGAGCCGC...

Protein

Download Protein FASTA

306 aa · TkA03G600130|TK1151|PROTEIN

MPVSMFQVFPNSKITFITSDTSVINSNNFTDDYDDALEAAVKNYQLNFNLNATGELDESTVKQILKPRCGVADIVNGSSTMNSGRAASMIGHSVGHYSFFPGTPRWPRSRRDLTYAFDPRNQLTDDVKRVFTNAFARWSEWTTLTFTNSSNYFTADLKIGFYGGSHGDGEDFDGVLGTLAHAFAPPRGLLHLDSAETWIIDDVFSSGSPSAMDLESVAVHEIGHLLGLGHSSVEEAVMFPTISSGIRKVELARDDVEGIQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G600130
TK1151 IDTkA03G600130
OH-1004 IDLXL04_011543
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)100.000
Protein coverage (%)TK1151 91.830 / OH-1004 78.492
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G600130
LocationChr03:152387270-152389964 (+)
DescriptionSimilar to 2MMP: Metalloendoproteinase 2-MMP
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g70170 Matrix metalloproteinases (MMPs) or matrixins may play a role in the degradation and remodeling of the extracellular matrix (ECM) during development or in response to stresses (By similarity). No verified direct reference in this release
At1g24140 Matrix metalloproteinases (MMPs) or matrixins may play a role in the degradation and remodeling of the extracellular matrix (ECM) during development or in response to stresses (By similarity). No verified direct reference in this release
At1g59970 Matrix metalloproteinases (MMPs) or matrixins may play a role in the degradation and remodeling of the extracellular matrix (ECM) during development or in response to stresses (By similarity). No verified direct reference in this release
At4g16640 Matrix metalloproteinases (MMPs) or matrixins may play a role in the degradation and remodeling of the extracellular matrix (ECM) during development or in response to stresses. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011543 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006508 proteolysis Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009753 response to jasmonic acid Biological Process
GO:0030198 extracellular matrix organization Biological Process
GO:0030574 collagen catabolic process Biological Process
GO:0046686 response to cadmium ion Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0080186 developmental vegetative growth Biological Process
GO:1900056 negative regulation of leaf senescence Biological Process
GO:2000028 regulation of photoperiodism, flowering Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT1G24140
ath:AT1G59970
ath:AT1G70170
ath:AT4G16640
gmx:547880
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.239
Rank 1 · TkA03G600130 · TK1151
Lysosome / Vacuole0.210
Rank 2 · TkA03G600130 · TK1151
Extracellular0.165
Rank 3 · TkA03G600130 · TK1151
Endoplasmic reticulum0.109
Rank 4 · TkA03G600130 · TK1151
Cytoplasm0.090
Rank 5 · TkA03G600130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13583Reprolysin_411-75 aa
PF13582Reprolysin_313-91 aa
PF00413Peptidase_M1015-54 aa
PF30262PGDB_FadG-YbfG24-65 aa
PF12388Peptidase_M5725-63 aa
PF01471PG_binding_126-63 aa
PF01400Astacin28-47 aa
PF01400Astacin105-151 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G600130PF13583Reprolysin_411750.0005620.3
TkA03G600130PF13582Reprolysin_313910.002319.2
TkA03G600130PF00413Peptidase_M1015543.1e-48164.4
TkA03G600130PF30262PGDB_FadG-YbfG24650.02415.4
TkA03G600130PF12388Peptidase_M5725630.02814.9
TkA03G600130PF01471PG_binding_126631.3e-0835.6
TkA03G600130PF01400Astacin28470.006616.8
TkA03G600130PF01400Astacin1051510.006616.8
TkA03G600130PF00413Peptidase_M101062643.1e-48164.4
TkA03G600130PF10462Peptidase_M661201650.1411.8
TkA03G600130PF13583Reprolysin_42022350.0005620.3
TkA03G600130PF12388Peptidase_M572142320.02814.9
TkA03G600130PF16313DUF49532142300.08112.9
TkA03G600130PF10462Peptidase_M662142340.1411.8
TkA03G600130PF13582Reprolysin_32152310.002319.2
TkA03G600130PF01400Astacin2162310.006616.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O04529Arabidopsis thalianasp|O04529|2MMP_ARATH Metalloendoproteinase 2-MMP61.900%Swiss-ProtHigh
Q5XF51Arabidopsis thalianasp|Q5XF51|3MMP_ARATH Metalloendoproteinase 3-MMP60.500%Swiss-ProtHigh
Q9ZUJ5Arabidopsis thalianasp|Q9ZUJ5|5MMP_ARATH Metalloendoproteinase 5-MMP58.800%Swiss-ProtHigh
O23507Arabidopsis thalianasp|O23507|1MMP_ARATH Metalloendoproteinase 1-MMP51.900%Swiss-ProtHigh

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