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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G590460
Reference: TK1151 Chr: Chr03 Coordinates: 149998246-150005058 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2434 bp · TkA03G590460|TK1151|cDNA

TGTTACAGGTGGGGAGTGGCTAGAAAGAGGTTTCAAGATCCTGTTTGAGGCTTTTCTTGATCTTCAAAAAAAGGGATTCTGCCTCTTTACTGTGTCTTGTGGTTAATTCGGCTGCAAAGAGAAGCAGAACAGCCACATCCAGACCACATTAGCATCAAGGCCAACCATAAGATGAACCAACCGAGACCCCAACAGGGGCAAAAAGGTCCAAAAAATCTCCAAAACAGCAGCCACACAAGCAAGAAGAGCAACAACAATTG...

CDS

Download CDS FASTA

1896 bp · TkA03G590460|TK1151|CDS

ATGCAAACAGTAACAGCAGCACGGACGGAAGCACAAGACAGCATCAGGGGTAAAATGGTCATACTATGTGCCATGGCAACAAAGCTAAATTCAGGAGACAATAGAAGCCGGAGCTTCGTTTATATATTAATCATCGCCAGTTTGTGTGGTTTCTTCTATCTATTGGGGACATGGCAGAAGAGTGGATTCGGGAAAGGAGACACGCTCGCCATGGAGATGACCAAAACCAGCACCGCAAACTGCAACTCAATTCCAAATCT...

Protein

Download Protein FASTA

631 aa · TkA03G590460|TK1151|PROTEIN

MQTVTAARTEAQDSIRGKMVILCAMATKLNSGDNRSRSFVYILIIASLCGFFYLLGTWQKSGFGKGDTLAMEMTKTSTANCNSIPNLNFETHHSGNAGIIDDSSSKPLDFPPCDANFTDYTPCQDQKRAMKFPRNDMIYRERHCPPQEQKLKCLVPAPEGYVTPFSWPKSRDYVPYANAPYKALTVEKAIQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIDNGTVRTALDTGCGVASWGAYLWKRNVIAMSFA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G590460
TK1151 IDTkA03G590460
OH-1004 IDLXL04_029684
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)67.700
Protein coverage (%)TK1151 93.502 / OH-1004 90.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G590460
LocationChr03:149998246-150005058 (+)
DescriptionSimilar to At4g18030: Probable methyltransferase PMT14
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g26850 Probable methyltransferase PMT2. No verified direct reference in this release
At4g18030 Probable methyltransferase PMT14. No verified direct reference in this release
At4g10440 Probable methyltransferase PMT17. No verified direct reference in this release
At1g33170 Probable methyltransferase PMT18. No verified direct reference in this release
At4g00750 Probable methyltransferase PMT15. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029684 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0032259 methylation Biological Process
GO:0000139 Golgi membrane Cellular Component
GO:0000325 plant-type vacuole Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005768 endosome Cellular Component
GO:0005789 endoplasmic reticulum membrane Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005797 Golgi medial cisterna Cellular Component
GO:0005802 trans-Golgi network Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009505 plant-type cell wall Cellular Component
KEGG gene cross-reference
ath:AT1G26850
ath:AT1G33170
ath:AT2G45750
ath:AT4G10440
ath:AT4G18030
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.748
Rank 1 · TkA03G590460 · TK1151
Cell membrane0.079
Rank 2 · TkA03G590460 · TK1151
Endoplasmic reticulum0.074
Rank 3 · TkA03G590460 · TK1151
Extracellular0.058
Rank 4 · TkA03G590460 · TK1151
Cytoplasm0.044
Rank 5 · TkA03G590460 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08241Methyltransf_117-34 aa
PF03141Methyltransf_29119-620 aa
PF13847Methyltransf_31235-368 aa
PF08241Methyltransf_11236-330 aa
PF13649Methyltransf_25236-327 aa
PF08242Methyltransf_12236-328 aa
PF20922Anamorsin_N310-351 aa
PF11334DUF3136340-372 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G590460PF08241Methyltransf_117341.6e-1042.2
TkA03G590460PF03141Methyltransf_291196207.6e-226751.3
TkA03G590460PF13847Methyltransf_312353681.5e-0732.0
TkA03G590460PF08241Methyltransf_112363301.6e-1042.2
TkA03G590460PF13649Methyltransf_252363271.1e-0836.3
TkA03G590460PF08242Methyltransf_122363280.01117.1
TkA03G590460PF20922Anamorsin_N3103510.01316.0
TkA03G590460PF11334DUF31363403720.1912.2
TkA03G590460PF13649Methyltransf_255315751.1e-0836.3
TkA03G590460PF08242Methyltransf_125355760.01117.1
TkA03G590460PF13847Methyltransf_315395871.5e-0732.0
TkA03G590460PF08241Methyltransf_115415781.6e-1042.2
TkA03G590460PF20922Anamorsin_N5615860.01316.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
B9DFI7Arabidopsis thalianasp|B9DFI7|PMT2_ARATH Probable methyltransferase PMT271.900%Swiss-ProtHigh
Q94EJ6Arabidopsis thalianasp|Q94EJ6|PMTE_ARATH Probable methyltransferase PMT1466.100%Swiss-ProtHigh
Q9SZX8Arabidopsis thalianasp|Q9SZX8|PMTH_ARATH Probable methyltransferase PMT1752.800%Swiss-ProtHigh
Q9C884Arabidopsis thalianasp|Q9C884|PMTI_ARATH Probable methyltransferase PMT1852.100%Swiss-ProtHigh
Q9ZPH9Arabidopsis thalianasp|Q9ZPH9|PMTF_ARATH Probable methyltransferase PMT1553.000%Swiss-ProtHigh

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