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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G587450
Reference: TK1151 Chr: Chr03 Coordinates: 149264992-149265951 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

375 bp · TkA03G587450|TK1151|cDNA

ATGGGCTTCACGCCGATGACGACGGGCTCGACGGGAATCACTCGCGAGTTCCTGCTTCGGCGATTTGGAGGAGAGAACAGAGAAGGAGGAGAAGGTCGCGAGTTCCTGCTTCGGTTCTTCTGGTTTTTGAAGAACTGGAATGGATCAGGTGGGAAACAGGAAGACACAATTATGACGGAGCGCATGTCGACCTTCCATGAACAGGAAAGGAAATTAATTGAGGAAAATGAAAAACTGGAGCAGGAGGTGGGAGTAGCAAA...

CDS

Download CDS FASTA

375 bp · TkA03G587450|TK1151|CDS

ATGGGCTTCACGCCGATGACGACGGGCTCGACGGGAATCACTCGCGAGTTCCTGCTTCGGCGATTTGGAGGAGAGAACAGAGAAGGAGGAGAAGGTCGCGAGTTCCTGCTTCGGTTCTTCTGGTTTTTGAAGAACTGGAATGGATCAGGTGGGAAACAGGAAGACACAATTATGACGGAGCGCATGTCGACCTTCCATGAACAGGAAAGGAAATTAATTGAGGAAAATGAAAAACTGGAGCAGGAGGTGGGAGTAGCAAA...

Protein

Download Protein FASTA

124 aa · TkA03G587450|TK1151|PROTEIN

MGFTPMTTGSTGITREFLLRRFGGENREGGEGREFLLRFFWFLKNWNGSGGKQEDTIMTERMSTFHEQERKLIEENEKLEQEVGVAKKNGYVDYGDEGVDDFPNGHYNYETNPYPLSSLPLFKE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G587450
TK1151 IDTkA03G587450
OH-1004 IDLXL04_011437
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)98.500
Protein coverage (%)TK1151 54.839 / OH-1004 31.776
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G587450
LocationChr03:149264992-149265951 (+)
DescriptionSimilar to AGL70: Agamous-like MADS-box protein AGL70
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011437 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0009553 embryo sac development Biological Process
GO:0009908 flower development Biological Process
GO:0009910 negative regulation of flower development Biological Process
GO:0010022 meristem determinacy Biological Process
GO:0010048 vernalization response Biological Process
GO:0010093 specification of floral organ identity Biological Process
GO:0010094 specification of carpel identity Biological Process
GO:0010221 negative regulation of vernalization response Biological Process
GO:0010582 floral meristem determinacy Biological Process
KEGG gene cross-reference
ath:AT5G65050
ath:AT5G65060
ath:AT5G65080
dosa:Os02g0682200
sly:101268317
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.418
Rank 1 · TkA03G587450 · TK1151
Cytoplasm0.375
Rank 2 · TkA03G587450 · TK1151
Mitochondrion0.112
Rank 3 · TkA03G587450 · TK1151
Cell membrane0.111
Rank 4 · TkA03G587450 · TK1151
Endoplasmic reticulum0.073
Rank 5 · TkA03G587450 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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