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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G581990
Reference: TK1151 Chr: Chr03 Coordinates: 147747071-147752812 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2214 bp · TkA03G581990|TK1151|cDNA

ATGCTCAGAATCACCGGAAAAAGCGGCGGTGTTGGTCAGGTTCTCGCCGCCGTTGCGGCGGCTTTATTGCTTCGTCTATTCTCAGGCCCGGGCCCGGTGTACTTGCAGGAGATTGAGACCGAAGAGGACGACGGCGAGGGAGTCATTTCCGATTCTGAAACTTCCGTATCTGATAAAGTTTACCCTGTGACTATCCGCTGGACGAACATCACATGCTCACTCTCCGATAAATCTTCAAAATCGGTGCGATTCTTGCTTAA...

CDS

Download CDS FASTA

2214 bp · TkA03G581990|TK1151|CDS

ATGCTCAGAATCACCGGAAAAAGCGGCGGTGTTGGTCAGGTTCTCGCCGCCGTTGCGGCGGCTTTATTGCTTCGTCTATTCTCAGGCCCGGGCCCGGTGTACTTGCAGGAGATTGAGACCGAAGAGGACGACGGCGAGGGAGTCATTTCCGATTCTGAAACTTCCGTATCTGATAAAGTTTACCCTGTGACTATCCGCTGGACGAACATCACATGCTCACTCTCCGATAAATCTTCAAAATCGGTGCGATTCTTGCTTAA...

Protein

Download Protein FASTA

737 aa · TkA03G581990|TK1151|PROTEIN

MLRITGKSGGVGQVLAAVAAALLLRLFSGPGPVYLQEIETEEDDGEGVISDSETSVSDKVYPVTIRWTNITCSLSDKSSKSVRFLLKNVCGEAKPGRLLAIMGPSGSGKTTLLNVLAGQTVASPRLHLSGLLEVNGQTMSNKSFKFAYVRQEDLFFSQLTVRETLSLATELQLKGTYSKEDRDEYINNLLFKLGLVNCADTRVGDAKVRGVSGGEKKRLAMACELIASPSVIFADEPTTGLDAFQAEKVMETLRQLAQDG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G581990
TK1151 IDTkA03G581990
OH-1004 IDLXL04_011320
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)91.000
Protein coverage (%)TK1151 87.381 / OH-1004 98.177
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G581990
LocationChr03:147747071-147752812 (-)
DescriptionSimilar to ABCG7: ABC transporter G family member 7
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g01320 ABC transporter G family member 7. No verified direct reference in this release
At3g25620 ABC transporter G family member 21. No verified direct reference in this release
At4g27420 Together with ABCG31, involved in pollen coat deposition of steryl glycosides required for pollen fitness.
ABCG9, ABCG11 and ABCG14 ABC transporters are required for vascular development in Arabidopsis.2013 · DOI: 10.1111/tpj.12334
The role of Arabidopsis ABCG9 and ABCG31 ATP binding cassette transporters in pollen fitness and the deposition of steryl glycosides on the pollen coat.2014 · DOI: 10.1105/tpc.113.118935

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011320 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006856 eye pigment precursor transport Biological Process
GO:0015827 tryptophan transport Biological Process
GO:0015854 guanine transport Biological Process
GO:0032218 riboflavin transport Biological Process
GO:0042332 gravitaxis Biological Process
GO:0042401 biogenic amine biosynthetic process Biological Process
GO:0042441 eye pigment metabolic process Biological Process
GO:0042906 xanthine transport Biological Process
GO:0055085 transmembrane transport Biological Process
GO:0070731 cGMP transport Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT2G01320
ath:AT3G25620
ccat:101458180
dme:Dmel_CG2759
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.560
Rank 1 · TkA03G581990 · TK1151
Lysosome / Vacuole0.133
Rank 2 · TkA03G581990 · TK1151
Endoplasmic reticulum0.132
Rank 3 · TkA03G581990 · TK1151
Cytoplasm0.093
Rank 4 · TkA03G581990 · TK1151
Golgi apparatus0.081
Rank 5 · TkA03G581990 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13558SbcC_Walker_B4-22 aa
PF25199nSTAND_NTPase566-121 aa
PF03215Rad1780-167 aa
PF00005ABC_tran86-239 aa
PF13191AAA_1686-123 aa
PF20703nSTAND189-114 aa
PF13401AAA_2296-190 aa
PF03193RsgA_GTPase96-121 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G581990PF13558SbcC_Walker_B4220.511.4
TkA03G581990PF25199nSTAND_NTPase5661210.009916.4
TkA03G581990PF03215Rad17801677.6e-0523.4
TkA03G581990PF00005ABC_tran862393.5e-2589.9
TkA03G581990PF13191AAA_16861230.008817.3
TkA03G581990PF20703nSTAND1891140.2711.5
TkA03G581990PF13401AAA_22961900.0008920.3
TkA03G581990PF03193RsgA_GTPase961210.007116.9
TkA03G581990PF13604AAA_30961180.1712.3
TkA03G581990PF20720nSTAND3971210.113.0
TkA03G581990PF05729NACHT971170.212.2
TkA03G581990PF13173AAA_14971270.2811.9
TkA03G581990PF00437T2SSE971180.3110.3
TkA03G581990PF02463SMC_N982700.01215.7
TkA03G581990PF13555AAA_29981140.01415.9
TkA03G581990PF13476AAA_23981160.1213.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZU35Arabidopsis thalianasp|Q9ZU35|AB7G_ARATH ABC transporter G family member 779.000%Swiss-ProtHigh
Q7XA72Arabidopsis thalianasp|Q7XA72|AB21G_ARATH ABC transporter G family member 2131.300%Swiss-ProtMedium
Q9SZR9Arabidopsis thalianasp|Q9SZR9|AB9G_ARATH ABC transporter G family member 932.600%Swiss-ProtMedium

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