TkA03G581430 | RubberDandelionOmics

Gene overview

TkA03G581430

Reference: TK1151 Chr: Chr03 Coordinates: 147545807-147559274 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

939 bp · TkA03G581430|TK1151|cDNA

CTAGTACGAGTCATCGTCAACAATTTACAGTCATGGTATTCCCTTATAAAACCCACCTACGATGTGCTACACCTAGAGCGATAGAAATAGAGATAAGGGTTATATTCAGATTCAGAGAAATTCTCCGTCGGAAGTGGCGTAGAAATTCGCCGATGGGGCGGAGGAAGCTCGAAATAATGCGGATCGAAGACAAGAGTAGCAGACTGGTGACGTTTTCGAAGCGGAGAACGGGTTTGATTAAGAAAGCACGACAGCTTTCC...

CDS

Download CDS FASTA

462 bp · TkA03G581430|TK1151|CDS

ATGGTATTCCCTTATAAAACCCACCTACGATGTGCTACACCTAGAGCGATAGAAATAGAGATAAGGGTTATATTCAGATTCAGAGAAATTCTCCGTCGGAAGTGGCGTAGAAATTCGCCGATGGGGCGGAGGAAGCTCGAAATAATGCGGATCGAAGACAAGAGTAGCAGACTGGTGACGTTTTCGAAGCGGAGAACGGGTTTGATTAAGAAAGCACGACAGCTTTCCGTGCTCTGCGACGTCGACGTCGCCGTCATTGT...

Protein

Download Protein FASTA

153 aa · TkA03G581430|TK1151|PROTEIN

MVFPYKTHLRCATPRAIEIEIRVIFRFREILRRKWRRNSPMGRRKLEIMRIEDKSSRLVTFSKRRTGLIKKARQLSVLCDVDVAVIVFSARGKLYEFCSGGTANSVEHLLARYEANANRTINGNAQDLVSLNFFLINTLLGLHSVHTIYTMYK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G581430`
TK1151 ID	TkA03G581430
OH-1004 ID	LXL04_011303
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	92.100
Protein coverage (%)	TK1151 98.693 / OH-1004 55.720 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G581430

Location Chr03:147545807-147559274 (-)

Description Similar to AGL31: Agamous-like MADS-box protein AGL31

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g77080`	Probable transcription factor involved in the negative regulation of flowering time in both long and short days, probably through the photoperiodic and vernalization pathways.	No verified direct reference in this release
`At5g10140`	Putative transcription factor that seems to play a central role in the regulation of flowering time in the late-flowering phenotype by interacting with 'FRIGIDA', the autonomous and the vernalization flowering pathways.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0883100`	Probable transcription factor involved in the development of floral organs.	No verified direct reference in this release
`UniProt: A2XDY1`	Probable transcription factor involved in the development of floral organs.	No verified direct reference in this release
`Os03g0215400`	Probable transcription factor involved in the development of floral organs.	leafy hull sterile1 is a homeotic mutation in a rice MADS box gene affecting rice flower development.2000 · DOI: 10.1105/tpc.12.6.871 Ectopic expression of rice OsMADS1 reveals a role in specifying the lemma and palea, grass floral organs analogous to sepals.2001 · DOI: 10.1007/s004270100153 Conservation of the E-function for floral organ identity in rice revealed by the analysis of tissue culture-induced loss-of-function mutants of the OsMADS1 gene.2005 · DOI: 10.1007/s11103-005-2161-y Early flowering and reduced apical dominance result from ectopic expression of a rice MADS box gene.1994 · DOI: 10.1007/bf00013751
`Os09g0507200`	Probable transcription factor.	Characterization of two rice MADS box genes that control flowering time.1997 · PMID: 9339904

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011303 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0009266 response to temperature stimulus Biological Process

GO:0009908 flower development Biological Process

GO:0009909 regulation of flower development Biological Process

GO:0009910 negative regulation of flower development Biological Process

GO:0009911 positive regulation of flower development Biological Process

GO:0010048 vernalization response Biological Process

GO:0010221 negative regulation of vernalization response Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0030154 cell differentiation Biological Process

KEGG gene cross-reference

ath:AT1G77080

ath:AT2G45650

ath:AT5G10140

ath:AT5G65050

ath:AT5G65060

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.901

Rank 1 · TkA03G581430 · TK1151

Cytoplasm0.156

Rank 2 · TkA03G581430 · TK1151

Cell membrane0.028

Rank 3 · TkA03G581430 · TK1151

Endoplasmic reticulum0.021

Rank 4 · TkA03G581430 · TK1151

Plastid0.015

Rank 5 · TkA03G581430 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20376DUF667149-112 aa

PF00319SRF-TF50-97 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G581430	`PF20376`	DUF6671	49	112	0.23	11.9
TkA03G581430	`PF00319`	SRF-TF	50	97	2.8e-25	88.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9AT76`	Arabidopsis thaliana	sp\|Q9AT76\|AGL27_ARATH Agamous-like MADS-box protein AGL27	53.300%	Swiss-Prot	High
`Q9S7Q7`	Arabidopsis thaliana	sp\|Q9S7Q7\|FLC_ARATH MADS-box protein FLOWERING LOCUS C	67.100%	Swiss-Prot	Low
`Q40702`	Oryza sativa subsp. japonica	sp\|Q40702\|MADS2_ORYSJ MADS-box transcription factor 2	51.900%	Swiss-Prot	Medium
`A2XDY1`	Oryza sativa subsp. indica	sp\|A2XDY1\|MADS1_ORYSI MADS-box transcription factor 1	47.000%	Swiss-Prot	Medium
`Q10PZ9`	Oryza sativa subsp. japonica	sp\|Q10PZ9\|MADS1_ORYSJ MADS-box transcription factor 1	47.000%	Swiss-Prot	Medium
`Q9SAR1`	Oryza sativa subsp. japonica	sp\|Q9SAR1\|MADS8_ORYSJ MADS-box transcription factor 8	60.800%	Swiss-Prot	Low

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