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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G581120
Reference: TK1151 Chr: Chr03 Coordinates: 147475718-147479491 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2417 bp · TkA03G581120|TK1151|cDNA

GGGTCACGGGTGGCACGGTTCAAAGAGTTAAATCGACGTATATATGTGCCGTTTTTCTTCGTGTGCCGCAAATGTTGCACAATCGACATAAACCCTACCCTCGGTTATCAGACCATTCATAGCATACAAACAATGGGGATGAAGCTATTCAACGACGGAGGCTCCGATTCTGATGGCGGTGCCGATGACTTATCCAAAATCGAAATCGATGAAGAGTTCGCGCGCCGGTACGAGCATAACAAGAAACGTGAAGACTTGCA...

CDS

Download CDS FASTA

2034 bp · TkA03G581120|TK1151|CDS

GGGTCACGGGTGGCACGGTTCAAAGAGTTAAATCGACGTATATATGTGCCGTTTTTCTTCGTGTGCCGCAAATGTTGCACAATCGACATAAACCCTACCCTCGGTTATCAGACCATTCATAGCATACAAACAATGGGGATGAAGCTATTCAACGACGGAGGCTCCGATTCTGATGGCGGTGCCGATGACTTATCCAAAATCGAAATCGATGAAGAGTTCGCGCGCCGGTACGAGCATAACAAGAAACGTGAAGACTTGCA...

Protein

Download Protein FASTA

677 aa · TkA03G581120|TK1151|PROTEIN

GSRVARFKELNRRIYVPFFFVCRKCCTIDINPTLGYQTIHSIQTMGMKLFNDGGSDSDGGADDLSKIEIDEEFARRYEHNKKREDLQRFEELKKKGVIDSDRDSDEDDESSEDEANIVNYSSKQDLKFFDALIKVRKQDPSLKDKDAKLFDSDNEDDEDDEADDNKEKKKKPMYLKDVTAKHLIEKGPEFDDEDEDEEEENKNKKKSYFEEQEVFRKAVLDAVDDEDDEGDLLKVKNDKREIEDEDEGEYEKKLNEYFQE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G581120
TK1151 IDTkA03G581120
OH-1004 IDLXL04_011296
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 92.319 / OH-1004 98.736
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G581120
LocationChr03:147475718-147479491 (+)
DescriptionSimilar to KRI1: Protein KRI1 homolog
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011296 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process
GO:0042254 ribosome biogenesis Biological Process
GO:0005634 nucleus Cellular Component
GO:0005730 nucleolus Cellular Component
GO:0030686 90S preribosome Cellular Component
GO:0003723 RNA binding Molecular Function
KEGG gene cross-reference
bta:511427
dre:402800
hsa:65095
spo:2541654
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.946
Rank 1 · TkA03G581120 · TK1151
Cytoplasm0.152
Rank 2 · TkA03G581120 · TK1151
Mitochondrion0.020
Rank 3 · TkA03G581120 · TK1151
Cell membrane0.014
Rank 4 · TkA03G581120 · TK1151
Extracellular0.008
Rank 5 · TkA03G581120 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25885HH_EMRA75-116 aa
PF05178Kri1147-200 aa
PF12936Kri1_C161-170 aa
PF12936Kri1_C190-207 aa
PF05178Kri1193-276 aa
PF12936Kri1_C252-273 aa
PF05178Kri1300-318 aa
PF25885HH_EMRA338-378 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G581120PF25885HH_EMRA751163.78.6
TkA03G581120PF05178Kri11472001.5e-1971.1
TkA03G581120PF12936Kri1_C1611708.5e-2793.9
TkA03G581120PF12936Kri1_C1902078.5e-2793.9
TkA03G581120PF05178Kri11932761.5e-1971.1
TkA03G581120PF12936Kri1_C2522738.5e-2793.9
TkA03G581120PF05178Kri13003181.5e-1971.1
TkA03G581120PF25885HH_EMRA3383783.78.6
TkA03G581120PF05178Kri13544571.5e-1971.1
TkA03G581120PF12936Kri1_C3613838.5e-2793.9
TkA03G581120PF05178Kri15025161.5e-1971.1
TkA03G581120PF12936Kri1_C5175998.5e-2793.9
TkA03G581120PF05178Kri15906091.5e-1971.1
TkA03G581120PF05178Kri16306511.5e-1971.1
TkA03G581120PF12936Kri1_C6326488.5e-2793.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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