TkA03G580890 | RubberDandelionOmics

Gene overview

TkA03G580890

Reference: TK1151 Chr: Chr03 Coordinates: 147401333-147403743 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1819 bp · TkA03G580890|TK1151|cDNA

CGATACAGCTGAGGGGCTGACGTTTATATGATTGGGGGAATTGATATCAATCAAGTTCATAGCTGGCACTCATTCCGCGTTGTTTTTTCCTATTTTTGACGATTTCTTTCATCTTGTTCTTTTTCCAAGTACAATTGTCGGCTCCCCAGTTGTTATCAGATCTGCATTTTGTTTTCATATTGTTTTCAACAAAATTCTTGTAGGCGTTCAGCATTTTGCATAATACCAGGATTTCCGACTTCTGTTACCTGTTTTCGTAT...

CDS

Download CDS FASTA

1257 bp · TkA03G580890|TK1151|CDS

ATGGGGTCGAGGGTAGAGAATCATTCACATCACCCTGATTATGTGTCTTTAGCAGCACTGATGAGTAGAGAACTGCGAAGTGAAAAGATGGAGAAACCCTGTGTGAGATATGGATGTGCAGCTCAATCGAGAAAAGGGGAAGATTATTTCATGATGAAGACCGATTGCCAGCGACTTCACGGAAACCCTTCTTCCACTTTCTCTGTTTTCGGGATTTTTGATGGTCACAATGGCGACGCTGCAGCAATATATTCGAAAGA...

Protein

Download Protein FASTA

418 aa · TkA03G580890|TK1151|PROTEIN

MGSRVENHSHHPDYVSLAALMSRELRSEKMEKPCVRYGCAAQSRKGEDYFMMKTDCQRLHGNPSSTFSVFGIFDGHNGDAAAIYSKENIFNHVLDAIPGGLRRHEWLQALPRAMVAGFVKTDKQFQSKGLTSGTTATFVIIDGWTVTVASVGDSRCILDTPDGAVSVLTVDHRLEENTEERERVTASGGEVGRLNVIGGPEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPHVKQVKLSNRGGRLIIASDGIWDSLSSET...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G580890`
TK1151 ID	TkA03G580890
OH-1004 ID	LXL04_011289
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G580890

Location Chr03:147401333-147403743 (-)

Description Similar to At1g68410: Probable protein phosphatase 2C 15

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g09160`	Probable protein phosphatase 2C 5.	No verified direct reference in this release
`At1g68410`	Probable protein phosphatase 2C 15.	No verified direct reference in this release
`At1g47380`	Probable protein phosphatase 2C 12.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0513100`	Probable protein phosphatase 2C 3.	No verified direct reference in this release
`Os03g0301700`	Probable protein phosphatase 2C 33.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011289 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:1902531 regulation of intracellular signal transduction Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004722 protein serine/threonine phosphatase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G09160

ath:AT1G47380

ath:AT1G68410

dosa:Os01g0513100

dosa:Os03g0301700

osa:4323983

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.424

Rank 1 · TkA03G580890 · TK1151

Cell membrane0.330

Rank 2 · TkA03G580890 · TK1151

Nucleus0.308

Rank 3 · TkA03G580890 · TK1151

Golgi apparatus0.078

Rank 4 · TkA03G580890 · TK1151

Endoplasmic reticulum0.070

Rank 5 · TkA03G580890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00481PP2C62-283 aa

PF07228SpoIIE100-170 aa

PF13672PP2C_2128-282 aa

PF07228SpoIIE241-297 aa

PF07228SpoIIE322-362 aa

PF13451zf_Tbcl373-406 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G580890	`PF00481`	PP2C	62	283	6.3e-34	118.5
TkA03G580890	`PF07228`	SpoIIE	100	170	0.0066	17.1
TkA03G580890	`PF13672`	PP2C_2	128	282	0.00042	20.7
TkA03G580890	`PF07228`	SpoIIE	241	297	0.0066	17.1
TkA03G580890	`PF07228`	SpoIIE	322	362	0.0066	17.1
TkA03G580890	`PF13451`	zf_Tbcl	373	406	0.98	10.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O80492`	Arabidopsis thaliana	sp\|O80492\|P2C05_ARATH Probable protein phosphatase 2C 5	67.900%	Swiss-Prot	High
`Q9M9C6`	Arabidopsis thaliana	sp\|Q9M9C6\|P2C15_ARATH Probable protein phosphatase 2C 15	66.500%	Swiss-Prot	High
`Q9FX08`	Arabidopsis thaliana	sp\|Q9FX08\|P2C12_ARATH Probable protein phosphatase 2C 12	58.000%	Swiss-Prot	High
`Q0JMD4`	Oryza sativa subsp. japonica	sp\|Q0JMD4\|P2C03_ORYSJ Probable protein phosphatase 2C 3	72.700%	Swiss-Prot	High
`Q10MN6`	Oryza sativa subsp. japonica	sp\|Q10MN6\|P2C33_ORYSJ Probable protein phosphatase 2C 33	65.000%	Swiss-Prot	High

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