TkA03G576600 | RubberDandelionOmics

Gene overview

TkA03G576600

Reference: TK1151 Chr: Chr03 Coordinates: 146251345-146255557 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3197 bp · TkA03G576600|TK1151|cDNA

ATTTGTTTATCCAAAAACATACATAAACAAGCATTCCATCCATATCTCTCCCATACCTTGCTTTCCCTCCACGTGCCTAATGCCTATAAATATATATACACTCCACTGTATTTATCACTCTGTAGCTATAGCCCAACTGTACCACCAATCTCCTCCGCCCCCACCGTAAACCACCGCCATGGTCTCTACTTCGAGACCCTTTCTATATCTTGCGGTTGTACTTCTTGTATCATCATGTATATGCATTATTACAGCTTCTT...

CDS

Download CDS FASTA

2793 bp · TkA03G576600|TK1151|CDS

ATGGTCTCTACTTCGAGACCCTTTCTATATCTTGCGGTTGTACTTCTTGTATCATCATGTATATGCATTATTACAGCTTCTTCTTCAAAAACCGGACCTGCTCCCATCGGCAATGGCTACCGTCTGATCTCCATTGGTGAATCCTCCGATGGTGGACTTATCGGTCAACTTCAAGTCAAACAGAGCAACAACATCTACGGCCCTGATATCCCTCTTTTGCAGTTATTTGTCAAGCATGAAACCGATGATCGGTTGAGGGT...

Protein

Download Protein FASTA

930 aa · TkA03G576600|TK1151|PROTEIN

MVSTSRPFLYLAVVLLVSSCICIITASSSKTGPAPIGNGYRLISIGESSDGGLIGQLQVKQSNNIYGPDIPLLQLFVKHETDDRLRVHITDAKQQRWEVPYNLLPREQPPRPLKQTIGQSTETLIPTTEHAGKELLFSYIADPFSFAVKRKSNGETLFNSASDESSPYNSLVFKDQYLEISTSLPKDASLYGLGENTQPHGIKLYPNEPYTLWTTDQSAINLNMDLYGSHPVYMDLRNVGGEAKAHGVLLLNSNGMDVVY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G576600`
TK1151 ID	TkA03G576600
OH-1004 ID	LXL04_021371
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	78.000
Protein coverage (%)	TK1151 99.785 / OH-1004 95.701 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G576600

Location Chr03:146251345-146255557 (+)

Description Similar to XYL1: Alpha-xylosidase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g68560`	Glycoside hydrolase releasing xylosyl residues from xyloglucan oligosaccharides at the non-reducing end.	AXY3 encodes a α-xylosidase that impacts the structure and accessibility of the hemicellulose xyloglucan in Arabidopsis plant cell walls.2011 · DOI: 10.1007/s00425-010-1330-7
`At3g45940`	Putative alpha-xylosidase 2.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0675700`	Probable alpha-glucosidase Os06g0675700.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021371 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000272 polysaccharide catabolic process Biological Process

GO:0005975 carbohydrate metabolic process Biological Process

GO:0010411 xyloglucan metabolic process Biological Process

GO:0045493 xylan catabolic process Biological Process

GO:0046686 response to cadmium ion Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

KEGG gene cross-reference

ath:AT1G68560

ath:AT3G45940

dosa:Os06g0675700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.430

Rank 1 · TkA03G576600 · TK1151

Extracellular0.261

Rank 2 · TkA03G576600 · TK1151

Endoplasmic reticulum0.123

Rank 3 · TkA03G576600 · TK1151

Cytoplasm0.112

Rank 4 · TkA03G576600 · TK1151

Golgi apparatus0.087

Rank 5 · TkA03G576600 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13802Gal_mutarotas_282-255 aa

PF01055Glyco_hydro_31_2nd298-671 aa

PF21365Glyco_hydro_31_3rd679-768 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G576600	`PF13802`	Gal_mutarotas_2	82	255	9.1e-14	52.8
TkA03G576600	`PF01055`	Glyco_hydro_31_2nd	298	671	1.1e-119	400.3
TkA03G576600	`PF21365`	Glyco_hydro_31_3rd	679	768	2.3e-20	73.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9S7Y7`	Arabidopsis thaliana	sp\|Q9S7Y7\|XYL1_ARATH Alpha-xylosidase 1	72.100%	Swiss-Prot	High
`F4J6T7`	Arabidopsis thaliana	sp\|F4J6T7\|XYL2_ARATH Putative alpha-xylosidase 2	63.400%	Swiss-Prot	High
`Q653V7`	Oryza sativa subsp. japonica	sp\|Q653V7\|AGLU_ORYSJ Probable alpha-glucosidase Os06g0675700	47.400%	Swiss-Prot	Medium

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