TkA03G575640 | RubberDandelionOmics

Gene overview

TkA03G575640

Reference: TK1151 Chr: Chr03 Coordinates: 145994502-145994905 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

336 bp · TkA03G575640|TK1151|cDNA

ATGCCCATGACTAAAGCCGCCAACACTCTCACCAACTTTAGTGGCACCGCGAGCTTAACTCCATTACTCGGAGCTTTCATGGCGGATTCTTTCGCCGGCCGCTTTTGGACCATCACCGTCGCCTCCATCATTTACCAAATAGGAATGATATCTTTAACATTATCGGCGGTGCTACCAAAATTAAAACCGCCGCCATGCGATCAAAACGAAGAGAGAAAACTGCCAAGAACCCAATTCGGCTCAACTGGCGATTCTTTACG...

CDS

Download CDS FASTA

336 bp · TkA03G575640|TK1151|CDS

ATGCCCATGACTAAAGCCGCCAACACTCTCACCAACTTTAGTGGCACCGCGAGCTTAACTCCATTACTCGGAGCTTTCATGGCGGATTCTTTCGCCGGCCGCTTTTGGACCATCACCGTCGCCTCCATCATTTACCAAATAGGAATGATATCTTTAACATTATCGGCGGTGCTACCAAAATTAAAACCGCCGCCATGCGATCAAAACGAAGAGAGAAAACTGCCAAGAACCCAATTCGGCTCAACTGGCGATTCTTTACG...

Protein

Download Protein FASTA

111 aa · TkA03G575640|TK1151|PROTEIN

MPMTKAANTLTNFSGTASLTPLLGAFMADSFAGRFWTITVASIIYQIGMISLTLSAVLPKLKPPPCDQNEERKLPRTQFGSTGDSLRIASVNGGWVWRNPAVCGGVWGGPV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G575640`
TK1151 ID	TkA03G575640
OH-1004 ID	LXL04_021382
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	63.900
Protein coverage (%)	TK1151 86.486 / OH-1004 16.469 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G575640

Location Chr03:145994502-145994905 (-)

Description Similar to NPF3.1: Protein NRT1/ PTR FAMILY 3.1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g68570`	May act as an efflux-type nitrite transporter.	A nitrite transporter associated with nitrite uptake by higher plant chloroplasts.2007 · DOI: 10.1093/pcp/pcm073
`At3g54140`	Peptide transporter.	AtPTR1, a plasma membrane peptide transporter expressed during seed germination and in vascular tissue of Arabidopsis.2004 · DOI: 10.1111/j.1365-313x.2004.02224.x AtPTR1 and AtPTR5 transport dipeptides in planta.2008 · DOI: 10.1104/pp.108.123844
`At1g52190`	Low-affinity nitrate transporter involved in xylem-to-phloem transfer for redistributing nitrate into developing leaves.	Two phloem nitrate transporters, NRT1.11 and NRT1.12, are important for redistributing xylem-borne nitrate to enhance plant growth.2013 · DOI: 10.1104/pp.113.226563
`At1g62200`	Protein NRT1/ PTR FAMILY 8.5.	No verified direct reference in this release
`At1g12110`	Dual affinity nitrate transporter.	CHL1 is a dual-affinity nitrate transporter of Arabidopsis involved in multiple phases of nitrate uptake.1999 · DOI: 10.1105/tpc.11.5.865 The nitrate transporter AtNRT1.1 (CHL1) functions in stomatal opening and contributes to drought susceptibility in Arabidopsis.2003 · DOI: 10.1105/tpc.006312 Switching between the two action modes of the dual-affinity nitrate transporter CHL1 by phosphorylation.2003 · DOI: 10.1093/emboj/cdg118 Transcript profiling in the chl1-5 mutant of Arabidopsis reveals a role of the nitrate transporter NRT1.1 in the regulation of another nitrate transporter, NRT2.1.2004 · DOI: 10.1105/tpc.104.024380 The Arabidopsis NRT1.1 transporter participates in the signaling pathway triggering root colonization of nitrate-rich patches.2006 · DOI: 10.1073/pnas.0605275103 A genetic screen for nitrate regulatory mutants captures the nitrate transporter gene NRT1.1.2009 · DOI: 10.1104/pp.109.140434 Nitrate-regulated auxin transport by NRT1.1 defines a mechanism for nutrient sensing in plants.2010 · DOI: 10.1016/j.devcel.2010.05.008 The herbicide sensitivity gene CHL1 of Arabidopsis encodes a nitrate-inducible nitrate transporter.1993 · DOI: 10.1016/0092-8674(93)90399-b The Arabidopsis CHL1 protein plays a major role in high-affinity nitrate uptake.1998 · DOI: 10.1073/pnas.95.25.15134

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021382 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006857 oligopeptide transport Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0010336 gibberellic acid homeostasis Biological Process

GO:0015031 protein transport Biological Process

GO:0015833 peptide transport Biological Process

GO:0042128 nitrate assimilation Biological Process

GO:0042938 dipeptide transport Biological Process

GO:0042939 tripeptide transport Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT1G62200

ath:AT1G68570

ath:AT2G02040

ath:AT3G54140

ath:AT5G01180

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.705

Rank 1 · TkA03G575640 · TK1151

Endoplasmic reticulum0.106

Rank 2 · TkA03G575640 · TK1151

Cytoplasm0.087

Rank 3 · TkA03G575640 · TK1151

Lysosome / Vacuole0.078

Rank 4 · TkA03G575640 · TK1151

Golgi apparatus0.032

Rank 5 · TkA03G575640 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00854PTR235-64 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G575640	`PF00854`	PTR2	35	64	0.0013	18.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SX20`	Arabidopsis thaliana	sp\|Q9SX20\|PTR18_ARATH Protein NRT1/ PTR FAMILY 3.1	77.100%	Swiss-Prot	Medium
`Q9M390`	Arabidopsis thaliana	sp\|Q9M390\|PTR1_ARATH Protein NRT1/ PTR FAMILY 8.1	56.500%	Swiss-Prot	Medium
`Q9M817`	Arabidopsis thaliana	sp\|Q9M817\|PTR6_ARATH Protein NRT1/ PTR FAMILY 1.2	50.800%	Swiss-Prot	Medium
`Q93Z20`	Arabidopsis thaliana	sp\|Q93Z20\|PTR17_ARATH Protein NRT1/ PTR FAMILY 8.5	55.700%	Swiss-Prot	Medium
`Q05085`	Arabidopsis thaliana	sp\|Q05085\|PTR7_ARATH Protein NRT1/ PTR FAMILY 6.3	50.000%	Swiss-Prot	Medium

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