TkA03G574330 | RubberDandelionOmics

Gene overview

TkA03G574330

Reference: TK1151 Chr: Chr03 Coordinates: 145606191-145608330 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1617 bp · TkA03G574330|TK1151|cDNA

CTTCGATTTATCCCAAGCCTTTAAACAACAAAAAGAAAAGGAAAAACAAGACTGTTTCTCTCTCTAGAATTATTTATATGTATATTATCTTGTATTCCAAGTTTATTCCTTTTTCTGATTCTTCTCTAGATCCTTTTATTCTCGTTCAAACCGGATCTCTCTATGCCCTCGGACAAAAGCTTTTCTTACATTTAATGCCCCCTTGATAAAGATTTTCCGTCGATTTCGTTCTTCAAAAGCGAGTGACTTTTGGAGCGACT...

CDS

Download CDS FASTA

1158 bp · TkA03G574330|TK1151|CDS

ATGGTTTTTGACAACAATCAGAGTGATTTTGGAGAGAAAATGCAGAGATGTCGGGAGTATATGGAAGCTTTGGAATCGGAACGCAAAAAGATCCAGGTCTTCGAACGCGAGCTTCCTCTTTGTCTTGAGCTTGTTACTCAAGCAATTGAAGGATGCAAACAGCAAATGTCTGGAACGACGACTGATTACTTCAATGGCCAATCTGAGTGTTCGGAGCAAACATCAAGTGAAGGTCCAATTTTGGAGGAATTTATCCCCAT...

Protein

Download Protein FASTA

385 aa · TkA03G574330|TK1151|PROTEIN

MVFDNNQSDFGEKMQRCREYMEALESERKKIQVFERELPLCLELVTQAIEGCKQQMSGTTTDYFNGQSECSEQTSSEGPILEEFIPMKRTSSGDEDDQEQQHQQQQQQQQQQNLNHKPKSTTTSTKDKSSFPSKKSDWLRSAQLSIQTPDPVELSPKIVPVVEVTRNGGGAFHPFKKEKISAAAPAAGICKLSPTPAAGPTAAVSSTAETGSGSAGCGGSKSEDKGQSNRKARRCWSPELHRRFLHSLQQLGGAHVATPK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G574330`
TK1151 ID	TkA03G574330
OH-1004 ID	LXL04_011217
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 95.062 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G574330

Location Chr03:145606191-145608330 (+)

Description Similar to HHO3: Transcription factor HHO3

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g25550`	Probable transcription factor involved in phosphate signaling in roots.	No verified direct reference in this release
`At1g68670`	Probable transcription factor involved in phosphate homeostasis.	Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.2016 · DOI: 10.1093/pcp/pcw063
`At1g13300`	Transcription factor involved in nitrate and phosphate signaling in roots.	Overexpressing HRS1 confers hypersensitivity to low phosphate-elicited inhibition of primary root growth in Arabidopsis thaliana.2009 · DOI: 10.1111/j.1744-7909.2009.00819.x HRS1 acts as a negative regulator of abscisic acid signaling to promote timely germination of Arabidopsis seeds.2012 · DOI: 10.1371/journal.pone.0035764 AtNIGT1/HRS1 integrates nitrate and phosphate signals at the Arabidopsis root tip.2015 · DOI: 10.1038/ncomms7274
`At3g25790`	Probable factor involved in nitrate and phosphate signaling in roots.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0325600`	Transcriptional repressor that may play a role in response to nitrogen.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011217 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0032107 regulation of response to nutrient levels Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0055062 phosphate ion homeostasis Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0080022 primary root development Biological Process

GO:0090548 response to nitrate starvation Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G13300

ath:AT1G25550

ath:AT1G68670

ath:AT3G25790

dosa:Os02g0325600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.965

Rank 1 · TkA03G574330 · TK1151

Cytoplasm0.121

Rank 2 · TkA03G574330 · TK1151

Cell membrane0.022

Rank 3 · TkA03G574330 · TK1151

Mitochondrion0.013

Rank 4 · TkA03G574330 · TK1151

Endoplasmic reticulum0.010

Rank 5 · TkA03G574330 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26575HHO5_N7-56 aa

PF28664SHOC1_PDDEXK_dom14-48 aa

PF16510P22_portal76-112 aa

PF01080Presenilin83-129 aa

PF24151ArlX87-122 aa

PF04145Ctr97-140 aa

PF26575HHO5_N100-115 aa

PF04145Ctr210-249 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G574330	`PF26575`	HHO5_N	7	56	4.2e-14	53.0
TkA03G574330	`PF28664`	SHOC1_PDDEXK_dom	14	48	0.084	13.4
TkA03G574330	`PF16510`	P22_portal	76	112	1.5	7.9
TkA03G574330	`PF01080`	Presenilin	83	129	7.8	5.8
TkA03G574330	`PF24151`	ArlX	87	122	5.8	7.0
TkA03G574330	`PF04145`	Ctr	97	140	1.8	9.8
TkA03G574330	`PF26575`	HHO5_N	100	115	4.2e-14	53.0
TkA03G574330	`PF04145`	Ctr	210	249	1.8	9.8
TkA03G574330	`PF00249`	Myb_DNA-binding	233	284	2.1e-05	25.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FPE8`	Arabidopsis thaliana	sp\|Q9FPE8\|HHO3_ARATH Transcription factor HHO3	47.600%	Swiss-Prot	Medium
`Q8VZS3`	Arabidopsis thaliana	sp\|Q8VZS3\|HHO2_ARATH Transcription factor HHO2	45.400%	Swiss-Prot	Medium
`Q9FX67`	Arabidopsis thaliana	sp\|Q9FX67\|HRS1_ARATH Transcription factor HRS1	42.900%	Swiss-Prot	Medium
`Q9LS00`	Arabidopsis thaliana	sp\|Q9LS00\|HHO1_ARATH Transcription factor HHO1	42.700%	Swiss-Prot	Medium
`Q6Z869`	Oryza sativa subsp. japonica	sp\|Q6Z869\|NIGT1_ORYSJ Transcription factor NIGT1	48.400%	Swiss-Prot	Medium

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