TkA03G572010 | RubberDandelionOmics

Gene overview

TkA03G572010

Reference: TK1151 Chr: Chr03 Coordinates: 145059980-145060825 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

807 bp · TkA03G572010|TK1151|cDNA

ATGCGTTTGTCTCTCCATATTGCTCGCAAGTTTTTCGGTCTTCAAGATATGTTAGGGTTTGACAAAGCAAGTAAAACCATCGAATGGCTTTTTTCAAAGTCGAAGAAGGCAATCGAAGAAGTCACCGAAGGCGTGAAATCACAAAACACTACTCAAAGCGTAAGCAACGAGAATATGATCGAGAGGTGCCAATCGCCTCTTTCCGATTGCGTTCTTGGTAAACAACTTATGATCCAAGATGATGAAATGGAGAATTGGAA...

CDS

Download CDS FASTA

807 bp · TkA03G572010|TK1151|CDS

ATGCGTTTGTCTCTCCATATTGCTCGCAAGTTTTTCGGTCTTCAAGATATGTTAGGGTTTGACAAAGCAAGTAAAACCATCGAATGGCTTTTTTCAAAGTCGAAGAAGGCAATCGAAGAAGTCACCGAAGGCGTGAAATCACAAAACACTACTCAAAGCGTAAGCAACGAGAATATGATCGAGAGGTGCCAATCGCCTCTTTCCGATTGCGTTCTTGGTAAACAACTTATGATCCAAGATGATGAAATGGAGAATTGGAA...

Protein

Download Protein FASTA

268 aa · TkA03G572010|TK1151|PROTEIN

MRLSLHIARKFFGLQDMLGFDKASKTIEWLFSKSKKAIEEVTEGVKSQNTTQSVSNENMIERCQSPLSDCVLGKQLMIQDDEMENWNSRKPTEIDILARESRYKARARARERTRERMMINNFEKSTQMFGVNPNDDYNHQLQLGFSVNPNNNYIKEPSGSPLEYSGTHHLFEQAQSDGITQKTEDYFSGFGYNKSFANPPAGSLNSSNTFLGFLGGWDSENMIRLDSENYGILPNNGSSTGDIHDQSLSSLIFPPTNLMH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G572010`
TK1151 ID	TkA03G572010
OH-1004 ID	LXL04_011198
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	95.400
Protein coverage (%)	TK1151 100.000 / OH-1004 70.426 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G572010

Location Chr03:145059980-145060825 (-)

Description Similar to TCP12: Transcription factor TCP12

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g68800`	Transcription factor that prevents axillary bud outgrowth.	No verified direct reference in this release
`At1g67260`	Involved in petal morphogenesis.	Control of corolla monosymmetry in the Brassicaceae Iberis amara.2007 · DOI: 10.1073/pnas.0705338104

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0706500`	Probable transcription factor that functions as a negative regulator of lateral branching, presumably through its expression in axillary buds.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011198 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009908 flower development Biological Process

GO:0010075 regulation of meristem growth Biological Process

GO:0048831 regulation of shoot system development Biological Process

GO:1902347 response to strigolactone Biological Process

GO:2000032 regulation of secondary shoot formation Biological Process

GO:0005634 nucleus Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G67260

ath:AT1G68800

dosa:Os03g0706500

osa:4333856

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.959

Rank 1 · TkA03G572010 · TK1151

Cytoplasm0.113

Rank 2 · TkA03G572010 · TK1151

Cell membrane0.030

Rank 3 · TkA03G572010 · TK1151

Endoplasmic reticulum0.019

Rank 4 · TkA03G572010 · TK1151

Plastid0.014

Rank 5 · TkA03G572010 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03634TCP1-118 aa

PF08882Acetone_carb_G72-120 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G572010	`PF03634`	TCP	1	118	2.4e-27	97.1
TkA03G572010	`PF08882`	Acetone_carb_G	72	120	0.17	12.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`A0AQW4`	Arabidopsis thaliana	sp\|A0AQW4\|TCP12_ARATH Transcription factor TCP12	80.000%	Swiss-Prot	Low
`Q9FYG7`	Arabidopsis thaliana	sp\|Q9FYG7\|TCP1_ARATH Transcription factor TCP1	57.100%	Swiss-Prot	Low
`Q8LN68`	Oryza sativa subsp. japonica	sp\|Q8LN68\|TB1_ORYSJ Transcription factor TB1	73.200%	Swiss-Prot	Low

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