TkA03G565350 | RubberDandelionOmics

Gene overview

TkA03G565350

Reference: TK1151 Chr: Chr03 Coordinates: 143444882-143445679 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

693 bp · TkA03G565350|TK1151|cDNA

ATGGCGGCGTCCCTCCTCCGCCTCCATTTCCACGACTGCTTCGTTCAGGGCTGTGATGCGTCAATCTTACTAGACGATGCAGGTCCCACAATCATAAGCGAAAAGAATGCGTTGCCTAATAAGGGTTCTGTAAGAGGTTACGAAGTGATAGAGGCGGCAAAATCGGAGGTTGAGAAACTATGTCCCGGAGTCGTATCTTGTGCCGACATACTCACGGTGGCGGCCCGTGATGCTTCAGAAATGTCGCTTATTTCGAATTT...

CDS

Download CDS FASTA

693 bp · TkA03G565350|TK1151|CDS

ATGGCGGCGTCCCTCCTCCGCCTCCATTTCCACGACTGCTTCGTTCAGGGCTGTGATGCGTCAATCTTACTAGACGATGCAGGTCCCACAATCATAAGCGAAAAGAATGCGTTGCCTAATAAGGGTTCTGTAAGAGGTTACGAAGTGATAGAGGCGGCAAAATCGGAGGTTGAGAAACTATGTCCCGGAGTCGTATCTTGTGCCGACATACTCACGGTGGCGGCCCGTGATGCTTCAGAAATGTCGCTTATTTCGAATTT...

Protein

Download Protein FASTA

230 aa · TkA03G565350|TK1151|PROTEIN

MAASLLRLHFHDCFVQGCDASILLDDAGPTIISEKNALPNKGSVRGYEVIEAAKSEVEKLCPGVVSCADILTVAARDASEMSLISNFRDNGLSARDMVALSGAHSIGQAQCFLFRDRIYSNGSDIDGGFASTRRRGCPRIGGDGNLAPLDLVTPNSFDYNYFKNLMQKKGLLESDQVLYSGGSTDSIVSEYSSNPNKFKSDFAAAMVKMSEIRPLMGEEGVIRRICGAVP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G565350`
TK1151 ID	TkA03G565350
OH-1004 ID	LXL04_011101
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	86.800
Protein coverage (%)	TK1151 100.000 / OH-1004 82.298 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G565350

Location Chr03:143444882-143445679 (+)

Description Similar to Lignin-forming anionic peroxidase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g14550`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At1g14540`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At5g05340`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011101 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0009809 lignin biosynthetic process Biological Process

GO:0010089 xylem development Biological Process

GO:0042744 hydrogen peroxide catabolic process Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:1901430 positive regulation of syringal lignin biosynthetic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004601 peroxidase activity Molecular Function

GO:0020037 heme binding Molecular Function

KEGG gene cross-reference

ath:AT1G14540

ath:AT1G14550

ath:AT5G05340

nsy:104248753

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.511

Rank 1 · TkA03G565350 · TK1151

Lysosome / Vacuole0.215

Rank 2 · TkA03G565350 · TK1151

Cytoplasm0.117

Rank 3 · TkA03G565350 · TK1151

Endoplasmic reticulum0.055

Rank 4 · TkA03G565350 · TK1151

Cell membrane0.047

Rank 5 · TkA03G565350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00141peroxidase1-81 aa

PF01044Vinculin44-82 aa

PF00141peroxidase83-194 aa

PF02813Retro_M146-158 aa

PF02813Retro_M162-192 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G565350	`PF00141`	peroxidase	1	81	1.3e-61	209.2
TkA03G565350	`PF01044`	Vinculin	44	82	0.14	11.2
TkA03G565350	`PF00141`	peroxidase	83	194	1.3e-61	209.2
TkA03G565350	`PF02813`	Retro_M	146	158	0.012	16.7
TkA03G565350	`PF02813`	Retro_M	162	192	0.012	16.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M9Q9`	Arabidopsis thaliana	sp\|Q9M9Q9\|PER5_ARATH Peroxidase 5	61.300%	Swiss-Prot	High
`Q9LE15`	Arabidopsis thaliana	sp\|Q9LE15\|PER4_ARATH Peroxidase 4	58.500%	Swiss-Prot	High
`Q9FLC0`	Arabidopsis thaliana	sp\|Q9FLC0\|PER52_ARATH Peroxidase 52	55.300%	Swiss-Prot	High

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