TkA03G556720 | RubberDandelionOmics

Gene overview

TkA03G556720

Reference: TK1151 Chr: Chr03 Coordinates: 140910145-140912997 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1432 bp · TkA03G556720|TK1151|cDNA

TATCTCTCATATACGAAATATTGAAACATTAACTAATAAGATAGATTGTCATTTACAAAATTCCTAAATTTATTCTTCTCAATTACACTATAAATACTTCAACAATTTCTTAGAAGTTATATCGACCCTGTTTCACAACAGCTAAAAGCGTAGTCTCAAATTGAAAGCTTGAAAGCTATTGGCTCAAAGTGATTGGTGATGGGTGAGAGATGGTGGTGTTTGGTTACTTTGTGTGGAGTTTTGTCAGCAACAGCATTAGC...

CDS

Download CDS FASTA

1038 bp · TkA03G556720|TK1151|CDS

ATGGGTGAGAGATGGTGGTGTTTGGTTACTTTGTGTGGAGTTTTGTCAGCAACAGCATTAGCAAATGGTTCTAAGTGCGATTTGTACTCAGGGAGTTGGGTATACGATGATTCATATCCTTTGTATGATTCATCAAAATGTCCGCACATTCGAAAGGAATACGATTGCATCAAATACGGTCGCCCCGACCTTACCTACCTCAAATTTAGATGGCACCCCACCCATTGTCTCTTACCCAGATTCGACGCAGAAGAATTCCT...

Protein

Download Protein FASTA

345 aa · TkA03G556720|TK1151|PROTEIN

MGERWWCLVTLCGVLSATALANGSKCDLYSGSWVYDDSYPLYDSSKCPHIRKEYDCIKYGRPDLTYLKFRWHPTHCLLPRFDAEEFLKKMSGKKIMFVGDSVSVNQWQSMVCLLHAALPSESNITEETINSTTTVTYEDYGVSISVFLSHYLVDIEETEIGRVLMLDSITDGDVWKDNDVLIFNTWLWWYRRGEKQPWDYIEIGANIVKDMDRMVAFREALRTWADWVDSEVDTEKTTVFFQGVSPSHYNGADWNEPGVT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G556720`
TK1151 ID	TkA03G556720
OH-1004 ID	LXL04_010933
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G556720

Location Chr03:140910145-140912997 (+)

Description Similar to TBL38: Protein trichome birefringence-like 38

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g29050`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At3g14850`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At2g34070`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At2g31110`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At2g42570`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010933 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009827 plant-type cell wall modification Biological Process

GO:0009867 jasmonic acid mediated signaling pathway Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0016413 O-acetyltransferase activity Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G29050

ath:AT2G31110

ath:AT2G34070

ath:AT2G42570

ath:AT3G14850

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.232

Rank 1 · TkA03G556720 · TK1151

Lysosome / Vacuole0.188

Rank 2 · TkA03G556720 · TK1151

Extracellular0.126

Rank 3 · TkA03G556720 · TK1151

Cell membrane0.093

Rank 4 · TkA03G556720 · TK1151

Endoplasmic reticulum0.092

Rank 5 · TkA03G556720 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14416PMR5N25-76 aa

PF24536NXPE4_C71-140 aa

PF13839PC-Esterase78-342 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G556720	`PF14416`	PMR5N	25	76	6.4e-22	78.3
TkA03G556720	`PF24536`	NXPE4_C	71	140	0.052	13.8
TkA03G556720	`PF13839`	PC-Esterase	78	342	5.7e-91	306.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8VY22`	Arabidopsis thaliana	sp\|Q8VY22\|TBL38_ARATH Protein trichome birefringence-like 38	53.600%	Swiss-Prot	High
`F4IWA8`	Arabidopsis thaliana	sp\|F4IWA8\|TBL41_ARATH Protein trichome birefringence-like 41	54.200%	Swiss-Prot	High
`O22960`	Arabidopsis thaliana	sp\|O22960\|TBL37_ARATH Protein trichome birefringence-like 37	50.300%	Swiss-Prot	High
`Q67XC4`	Arabidopsis thaliana	sp\|Q67XC4\|TBL40_ARATH Protein trichome birefringence-like 40	49.400%	Swiss-Prot	Medium
`Q9SIN2`	Arabidopsis thaliana	sp\|Q9SIN2\|TBL39_ARATH Protein trichome birefringence-like 39	48.300%	Swiss-Prot	Medium

JBrowse

View in Genome Browser

Gene Card