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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G556470
Reference: TK1151 Chr: Chr03 Coordinates: 140884511-140886697 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1712 bp · TkA03G556470|TK1151|cDNA

GTCAGGCTCTAGTCGTTGACTATGGGTGTTTGACCACGTCCATGGTACTCAATCTAAAAACTCATATGTCAAAAAGACTTCTTCAGAACCCCCAATTGCTCCCGCTATCAAATTGTTTCCGAGAATTGCCTACGAATTCGCTGAATAGGCGAATCTGTACTGATCTGGACTATGCAACGACGATTCTGACATCGAATTTCAGATCCATCTAATTTCCTACACGAGTTTGGCAGTGAACGAGTCCAATAGATGAAATCACA...

CDS

Download CDS FASTA

1317 bp · TkA03G556470|TK1151|CDS

ATGAGCAGTACACGAATTCCAACACGCTACGTGATCGTCATACTAACCTTCATATGCACCTGCGTATGCTACATAGAACGCGTAGGCTTTTCAATCGCATACACAGTCGCAGCAGATGCAGAAGGCGTAAGCCAATCAAGCAAAGGCACAATCCTCTCAACATTCTACTACGGCTACGCATTATCACAAGTCCCCGGCGGTTGGGCCGCTCAAAAAATCGGCGGTAGGCGTGTCCTTCTTCTCTCATTCATCCTATGGTC...

Protein

Download Protein FASTA

438 aa · TkA03G556470|TK1151|PROTEIN

MSSTRIPTRYVIVILTFICTCVCYIERVGFSIAYTVAADAEGVSQSSKGTILSTFYYGYALSQVPGGWAAQKIGGRRVLLLSFILWSLTSALVPLDPNRVITLIIARLLVGIAQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLLLPTLVKFKGPQSVFLAEACLGGMWSILWFKFASDPPRSNHPKAAASGFGESLLPVKDNQRTKNEKVTQIQIPWRKIFLSLPVWAIVVNNFTFHYALYVLMNWLPT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G556470
TK1151 IDTkA03G556470
OH-1004 IDLXL04_003344
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)80.000
Protein coverage (%)TK1151 93.607 / OH-1004 24.446
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G556470
LocationChr03:140884511-140886697 (-)
DescriptionSimilar to ANTR5: Probable anion transporter 5
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g44370 Inorganic phosphate and probable anion transporter. No verified direct reference in this release
At4g00370 Inorganic phosphate and probable anion transporter.
AtPHT4;4 is a chloroplast-localized ascorbate transporter in Arabidopsis.2015 · DOI: 10.1038/ncomms6928

Rice

Reference gene IDPossible functionPapers / DOI
Os11g0186800 Probable anion transporter. No verified direct reference in this release
Os12g0180100 Probable anion transporter. No verified direct reference in this release
Os09g0570400 Probable anion transporter. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_003344 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0006811 monoatomic ion transport Biological Process
GO:0009624 response to nematode Biological Process
GO:0000118 histone deacetylase complex Cellular Component
GO:0000139 Golgi membrane Cellular Component
GO:0000785 chromatin Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0048188 Set1C/COMPASS complex Cellular Component
GO:0003712 transcription coregulator activity Molecular Function
GO:0005315 phosphate transmembrane transporter activity Molecular Function
KEGG gene cross-reference
ath:AT1G11950
ath:AT5G44370
dosa:Os11g0186800
dosa:Os12g0180100
osa:4349969
osa:4351670
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.278
Rank 1 · TkA03G556470 · TK1151
Golgi apparatus0.195
Rank 2 · TkA03G556470 · TK1151
Endoplasmic reticulum0.188
Rank 3 · TkA03G556470 · TK1151
Cytoplasm0.159
Rank 4 · TkA03G556470 · TK1151
Cell membrane0.122
Rank 5 · TkA03G556470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30271SINE3_TM8-19 aa
PF07690MFS_117-385 aa
PF11137DUF290927-33 aa
PF00083Sugar_tr41-234 aa
PF05977MFS_365-186 aa
PF30271SINE3_TM77-93 aa
PF11137DUF290978-95 aa
PF03137OATP100-155 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G556470PF30271SINE3_TM8190.2412.2
TkA03G556470PF07690MFS_1173852.8e-53181.8
TkA03G556470PF11137DUF290927332.78.7
TkA03G556470PF00083Sugar_tr412345.8e-0522.9
TkA03G556470PF05977MFS_3651860.0001720.9
TkA03G556470PF30271SINE3_TM77930.2412.2
TkA03G556470PF11137DUF290978952.78.7
TkA03G556470PF03137OATP1001550.2510.3
TkA03G556470PF11137DUF29091031172.78.7
TkA03G556470PF03137OATP1693230.2510.3
TkA03G556470PF30271SINE3_TM2292410.2412.2
TkA03G556470PF05977MFS_32823280.0001720.9
TkA03G556470PF03137OATP3644310.2510.3
TkA03G556470PF07690MFS_14064302.8e-53181.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FKV1Arabidopsis thalianasp|Q9FKV1|ANTR5_ARATH Probable anion transporter 576.900%Swiss-ProtHigh
Q8GX78Arabidopsis thalianasp|Q8GX78|ANTR2_ARATH Ascorbate transporter, chloroplastic35.500%Swiss-ProtMedium
Q53P54Oryza sativa subsp. japonicasp|Q53P54|PHT46_ORYSJ Probable anion transporter 670.700%Swiss-ProtHigh
Q2QWW7Oryza sativa subsp. japonicasp|Q2QWW7|PHT47_ORYSJ Probable anion transporter 768.800%Swiss-ProtHigh
Q652N5Oryza sativa subsp. japonicasp|Q652N5|PHT44_ORYSJ Probable anion transporter 4, chloroplastic35.900%Swiss-ProtMedium

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