TkA03G555770 | RubberDandelionOmics

Gene overview

TkA03G555770

Reference: TK1151 Chr: Chr03 Coordinates: 140694850-140696988 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1362 bp · TkA03G555770|TK1151|cDNA

CTTTGACATATGTGATAAGATTTGAAAATGGTGGCTTCCAAAGATTCACCACCTATTTACAACATATTATTCTTTTTCATTTATCATGTATTTTCTGATTTCTCTACCTTTTTCCGATGTTCTCCAAAGTCGAGCAAAACGGATCTGTGAAATTACTGGATGTCGTGACTCGAATCTGATCCGAACTACGAACCAGATCTGGAACGGCGAGAGTTCTCCGCCACTGTGATTGTTAGATATCAGATCTCCTCTGACGCGCT...

CDS

Download CDS FASTA

831 bp · TkA03G555770|TK1151|CDS

ATGCAGGCTCGGATCAAAAAAATAATGCAAGCGGATGAAGATGTTGGAAAAATCGCCATGGCTGTGCCTGTTTTAGTTTCAAAAGCTTTGGAGCTATTTCTCCAAGATCTTTGTGATCGTACATATGACATAACTCTACGCAGAGGTGCAAAAACTGTTAACTCACTGCATCTAAAGCACTGTGTGCAAAGCTACAATGTATTTGATTTTCTGAGAGAAGTTGTGAGTAAGGTCCCTGACTATGGCCATTCTGATGCTGG...

Protein

Download Protein FASTA

276 aa · TkA03G555770|TK1151|PROTEIN

MQARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLRRGAKTVNSLHLKHCVQSYNVFDFLREVVSKVPDYGHSDAGVDDRTMIKRKKAAAGETNDSDEELKRNRMVKNEARQTSSNGRGRGRGRGRGRGRGRGSTDREAPHTETELESYTPVIQPTATTAATSAANDGGRDFDLNAGVDENMEKVSSDGVDGGTLQQPPPPPPLLPPESVPVPGGGGGGGGGVEQKKEDDSGMSLTEMDRMVIDTGNLA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G555770`
TK1151 ID	TkA03G555770
OH-1004 ID	LXL04_010927
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.900
Protein coverage (%)	TK1151 99.275 / OH-1004 96.113 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA03G555770`
Location	Chr03:140694850-140696988 (+)
Description	Similar to Drap1: Dr1-associated corepressor
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_010927` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process GO:0006366 transcription by RNA polymerase II Biological Process GO:0017055 negative regulation of RNA polymerase II transcription preinitiation complex assembly Biological Process GO:0000785 chromatin Cellular Component GO:0005634 nucleus Cellular Component GO:0005829 cytosol Cellular Component GO:0017054 negative cofactor 2 complex Cellular Component GO:0043596 nuclear replication fork Cellular Component GO:0090575 RNA polymerase II transcription regulator complex Cellular Component GO:0001046 core promoter sequence-specific DNA binding Molecular Function GO:0001091 RNA polymerase II general transcription initiation factor binding Molecular Function GO:0003714 transcription corepressor activity Molecular Function
KEGG gene cross-reference	bta:540345 hsa:10589 mmu:66556 rno:293674 spo:2542201 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.983

Rank 1 · TkA03G555770 · TK1151

Cytoplasm0.085

Rank 2 · TkA03G555770 · TK1151

Cell membrane0.017

Rank 3 · TkA03G555770 · TK1151

Endoplasmic reticulum0.010

Rank 4 · TkA03G555770 · TK1151

Mitochondrion0.007

Rank 5 · TkA03G555770 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00808CBFD_NFYB_HMF3-62 aa

PF00125Histone4-59 aa

PF05918API5110-144 aa

PF13865FoP_duplication113-158 aa

PF15708PRR20118-169 aa

PF25698EBNA2_Core119-150 aa

PF25698EBNA2_Core209-219 aa

PF13865FoP_duplication226-251 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G555770	`PF00808`	CBFD_NFYB_HMF	3	62	1.6e-17	64.2
TkA03G555770	`PF00125`	Histone	4	59	0.16	13.1
TkA03G555770	`PF05918`	API5	110	144	0.036	13.7
TkA03G555770	`PF13865`	FoP_duplication	113	158	0.11	13.9
TkA03G555770	`PF15708`	PRR20	118	169	0.081	13.6
TkA03G555770	`PF25698`	EBNA2_Core	119	150	0.00082	19.2
TkA03G555770	`PF25698`	EBNA2_Core	209	219	0.00082	19.2
TkA03G555770	`PF13865`	FoP_duplication	226	251	0.11	13.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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