TkA03G554950 | RubberDandelionOmics

Gene overview

TkA03G554950

Reference: TK1151 Chr: Chr03 Coordinates: 140502065-140502739 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

675 bp · TkA03G554950|TK1151|cDNA

ATGCTCGAACCCGTCACTCAACTCAACATTCCCAAACTAAGCATCCCATCCCAACTCCTTGTTGAAGATTCCGACTCTCTGAAATCTGTTGAAATTCCAACCGGTTTGAAATTTCCGGTAATCGCGAAATCGTTTCTCGCCGACGGGTCCACCAAAGCACACGATATGCAATTGGTGTTCAACCACGAAGGGTTAGCGAAAGGGCTCGAACTTGAACCACCCATAGTGCTACAACAATTTGTGAACCACGGCGGGACCAT...

CDS

Download CDS FASTA

675 bp · TkA03G554950|TK1151|CDS

ATGCTCGAACCCGTCACTCAACTCAACATTCCCAAACTAAGCATCCCATCCCAACTCCTTGTTGAAGATTCCGACTCTCTGAAATCTGTTGAAATTCCAACCGGTTTGAAATTTCCGGTAATCGCGAAATCGTTTCTCGCCGACGGGTCCACCAAAGCACACGATATGCAATTGGTGTTCAACCACGAAGGGTTAGCGAAAGGGCTCGAACTTGAACCACCCATAGTGCTACAACAATTTGTGAACCACGGCGGGACCAT...

Protein

Download Protein FASTA

224 aa · TkA03G554950|TK1151|PROTEIN

MLEPVTQLNIPKLSIPSQLLVEDSDSLKSVEIPTGLKFPVIAKSFLADGSTKAHDMQLVFNHEGLAKGLELEPPIVLQQFVNHGGTIFKVYVAGDYVKCVRRTSLPDLSKETMGKLASDSGGAISFSRISGAVIAGDDGTSNDNSGEKLKKPAPEFLAEVAKGLREALGLHLFNFDMIRDGEGDGYLVIDINYFPGYEKLPSYETVMIDFFLNVKKSQDLKKKE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G554950`
TK1151 ID	TkA03G554950
OH-1004 ID	LXL04_010905
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 68.502 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G554950

Location Chr03:140502065-140502739 (+)

Description Similar to ITPK1: Inositol-tetrakisphosphate 1-kinase 1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g16760`	Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A0JJZ6`	Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3 and participates in phytic acid biosynthesis in developing seeds.	No verified direct reference in this release
`Os10g0576100`	Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3 and participates in phytic acid biosynthesis in developing seeds.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010905 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0010264 myo-inositol hexakisphosphate biosynthetic process Biological Process

GO:0032957 inositol trisphosphate metabolic process Biological Process

GO:0048316 seed development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0000825 inositol-1,3,4,5-tetrakisphosphate 6-kinase activity Molecular Function

GO:0000832 inositol hexakisphosphate 5-kinase activity Molecular Function

GO:0005102 signaling receptor binding Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0047325 inositol-3,4,5,6-tetrakisphosphate 1-kinase activity Molecular Function

KEGG gene cross-reference

ath:AT5G16760

dosa:Os10g0576100

gmx:100127430

zma:732818

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.747

Rank 1 · TkA03G554950 · TK1151

Nucleus0.395

Rank 2 · TkA03G554950 · TK1151

Endoplasmic reticulum0.062

Rank 3 · TkA03G554950 · TK1151

Cell membrane0.055

Rank 4 · TkA03G554950 · TK1151

Mitochondrion0.047

Rank 5 · TkA03G554950 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05770Ins134_P3_kin12-212 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G554950	`PF05770`	Ins134_P3_kin	12	212	4.3e-68	229.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SBA5`	Arabidopsis thaliana	sp\|Q9SBA5\|ITPK1_ARATH Inositol-tetrakisphosphate 1-kinase 1	50.200%	Swiss-Prot	High
`A0JJZ6`	Oryza sativa subsp. indica	sp\|A0JJZ6\|ITPK5_ORYSI Inositol-tetrakisphosphate 1-kinase 5	48.400%	Swiss-Prot	Medium
`Q7XBW0`	Oryza sativa subsp. japonica	sp\|Q7XBW0\|ITPK5_ORYSJ Inositol-tetrakisphosphate 1-kinase 5	48.400%	Swiss-Prot	Medium

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