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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G554580
Reference: TK1151 Chr: Chr03 Coordinates: 140408929-140415864 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2022 bp · TkA03G554580|TK1151|cDNA

ACATCTGCACGATGCTTTCCACTTTTGTTCACTTGTAAGTTTTTGAGATTCTCAAAACTACACAACTTTATAATATTTTCAACTACACCTCCTTCCTCTTCTTAAACCGAAAAAGGACATCCAACAAACTCTGCAATCCTTTTAACATTACTTACAGTATCCCTTTTCATATCCTCATATTTCAAGAACATAAATCTTTCCGGCCTTTCTTGGCTTTGTTGCTGGCGACCCAAGCACACACCAAAAAAGAATCCTTCTGC...

CDS

Download CDS FASTA

1470 bp · TkA03G554580|TK1151|CDS

ATGTGTCTTCCATACAGCTTCCCCTGTTATATTTTCAGTTTCAAATCCACAGTAAACGGAACACTAAATGTCCTAAAATCAGCTGCTAAAGTGTCATCTCTCAAAAGAGTGGTCTTAACATATTCCATAGCTGCGGTTTTCTACGACAATTCAAAATCCGATTCTAGCGTTGTGGATGAAACCTGGTTTTCAGATCCAGAAACTTGTGAACAAAAAGAGTTATGGTACGCCCTTTCGAAAACCCTGGCTGAAAAAGCAGC...

Protein

Download Protein FASTA

489 aa · TkA03G554580|TK1151|PROTEIN

MCLPYSFPCYIFSFKSTVNGTLNVLKSAAKVSSLKRVVLTYSIAAVFYDNSKSDSSVVDETWFSDPETCEQKELWYALSKTLAEKAAVKFCEENGLDLVVINPGFVLGPLLQPTLNLTSEEFIALIETGKEVFPGGIYGIVDVRDVAIAHILAFENLEASGREMNGEEKVVCVTGASGYIASWIVKLLLQRGYNVHATVRSLDDPKKTEHLRALDGAKERLSLFEANLTEEGSFDSAINGCECVFHTASPVLLSVSDPQA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G554580
TK1151 IDTkA03G554580
OH-1004 IDLXL04_010892
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)90.600
Protein coverage (%)TK1151 96.524 / OH-1004 84.577
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G554580
LocationChr03:140408929-140415864 (-)
DescriptionSimilar to TKPR1: Tetraketide alpha-pyrone reductase 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g15950 Involved in the latter stages of lignin biosynthesis.
Cloning and characterization of irregular xylem4 (irx4): a severely lignin-deficient mutant of Arabidopsis.2001 · DOI: 10.1046/j.1365-313x.2001.01021.x
Reassessment of effects on lignification and vascular development in the irx4 Arabidopsis mutant.2005 · DOI: 10.1016/j.phytochem.2004.12.016
Redirection of the phenylpropanoid pathway to feruloyl malate in Arabidopsis mutants deficient for cinnamoyl-CoA reductase 1.2008 · DOI: 10.1007/s00425-007-0669-x
The simultaneous repression of CCR and CAD, two enzymes of the lignin biosynthetic pathway, results in sterility and dwarfism in Arabidopsis thaliana.2011 · DOI: 10.1093/mp/ssq045

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010892 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007623 circadian rhythm Biological Process
GO:0009699 phenylpropanoid biosynthetic process Biological Process
GO:0009809 lignin biosynthetic process Biological Process
GO:0010597 green leaf volatile biosynthetic process Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0000166 nucleotide binding Molecular Function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Molecular Function
GO:0016621 cinnamoyl-CoA reductase activity Molecular Function
KEGG gene cross-reference
mtr:11427940
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.791
Rank 1 · TkA03G554580 · TK1151
Nucleus0.243
Rank 2 · TkA03G554580 · TK1151
Endoplasmic reticulum0.077
Rank 3 · TkA03G554580 · TK1151
Mitochondrion0.052
Rank 4 · TkA03G554580 · TK1151
Cell membrane0.051
Rank 5 · TkA03G554580 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01370Epimerase14-162 aa
PF16363GDP_Man_Dehyd14-108 aa
PF07993NAD_binding_415-113 aa
PF08659KR15-50 aa
PF02719Polysacc_synt_215-39 aa
PF010733Beta_HSD16-160 aa
PF13460NAD_binding_1027-105 aa
PF29214FlcC_C33-81 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G554580PF01370Epimerase141621.2e-33117.2
TkA03G554580PF16363GDP_Man_Dehyd141087.6e-1659.2
TkA03G554580PF07993NAD_binding_4151131.1e-1971.3
TkA03G554580PF08659KR15500.003118.2
TkA03G554580PF02719Polysacc_synt_215390.005616.6
TkA03G554580PF010733Beta_HSD161602.9e-2796.1
TkA03G554580PF13460NAD_binding_10271055.7e-1349.9
TkA03G554580PF29214FlcC_C33810.113.2
TkA03G554580PF00106adh_short841270.000321.0
TkA03G554580PF02844GARS_N851040.1113.9
TkA03G554580PF05198IF3_N851030.1612.8
TkA03G554580PF05368NmrA1682574.5e-0937.0
TkA03G554580PF00106adh_short1692410.000321.0
TkA03G554580PF01370Epimerase1714101.2e-33117.2
TkA03G554580PF08659KR1712950.003118.2
TkA03G554580PF02719Polysacc_synt_21712950.005616.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9S9N9Arabidopsis thalianasp|Q9S9N9|CCR1_ARATH Cinnamoyl-CoA reductase 143.800%Swiss-ProtMedium

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