TkA03G554570 | RubberDandelionOmics

Gene overview

TkA03G554570

Reference: TK1151 Chr: Chr03 Coordinates: 140406124-140408903 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1741 bp · TkA03G554570|TK1151|cDNA

TTTTGACCTAAATTTAGGGATCTCGATACGACGGCGGACCACACAGGTACACACCCCCTTTGAAGAATATCTTCGTCGGTTCATAAGCCTGCTCTAAACCCCGCCAAAACCCTAAACCATATCATTCTTCTCCATCACCTCCATAATATCAAGGGGTTTCAATTAGCTCGCAAAACCTAGAAAAAATGGAGGTTGAGGTAGCAGAAGAATCAATGGAGTTGAATAACAACGTCATGTGTCAATTAGCGGACCCAGAAGGA...

CDS

Download CDS FASTA

486 bp · TkA03G554570|TK1151|CDS

ATGAAACAGGCAGCTTTGGAAAGATACAATAAGATGAAGGGTGATGCTCCTGAGAGGTTAGTTTCAGGTAGTGATGACTTCACCATGTTCCTTTGGGAACCTTCTACAGATAAGAAACCCAAAACCCGAATGACAGGTCATCAACAGTTGGTGAACCATGTTTATTTTTCACCTGATGGACTATGGATTGCAAGTGCTTCCTTTGACAAATCTGTCAAGTTATGGAACGGTACTACAGGAAAGTTTGTTGCTGCTTTTCG...

Protein

Download Protein FASTA

161 aa · TkA03G554570|TK1151|PROTEIN

MKQAALERYNKMKGDAPERLVSGSDDFTMFLWEPSTDKKPKTRMTGHQQLVNHVYFSPDGLWIASASFDKSVKLWNGTTGKFVAAFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDVREKKLKQDLPGHADEVFAVDWSPDGEKVASGGRDRVLKLWMG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G554570`
TK1151 ID	TkA03G554570
OH-1004 ID	LXL04_010891
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	98.900
Protein coverage (%)	TK1151 56.522 / OH-1004 18.958 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G554570

Location Chr03:140406124-140408903 (+)

Description Similar to NLE1: Notchless protein homolog

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g52820`	Required for female gametophyte development.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010891 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000027 ribosomal large subunit assembly Biological Process

GO:0007219 Notch signaling pathway Biological Process

GO:0008593 regulation of Notch signaling pathway Biological Process

GO:0009553 embryo sac development Biological Process

GO:0042273 ribosomal large subunit biogenesis Biological Process

GO:0045930 negative regulation of mitotic cell cycle Biological Process

GO:0061484 hematopoietic stem cell homeostasis Biological Process

GO:0090263 positive regulation of canonical Wnt signaling pathway Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0080008 Cul4-RING E3 ubiquitin ligase complex Cellular Component

KEGG gene cross-reference

ath:AT5G52820

hsa:54475

mmu:217011

pon:100171489

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.678

Rank 1 · TkA03G554570 · TK1151

Cytoplasm0.337

Rank 2 · TkA03G554570 · TK1151

Cell membrane0.056

Rank 3 · TkA03G554570 · TK1151

Endoplasmic reticulum0.033

Rank 4 · TkA03G554570 · TK1151

Lysosome / Vacuole0.027

Rank 5 · TkA03G554570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24105Beta-prop_CAF1B_HIR110-158 aa

PF30151PAC1115-39 aa

PF30361TRM82_WD15-33 aa

PF24814WD40_Prp1916-159 aa

PF24017Beta-prop_SCAP16-118 aa

PF23609Beta-prop_EIPR117-75 aa

PF29630ASA117-76 aa

PF25174Beta-prop_THOC318-126 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G554570	`PF24105`	Beta-prop_CAF1B_HIR1	10	158	3.5e-21	76.3
TkA03G554570	`PF30151`	PAC11	15	39	4.4e-06	26.5
TkA03G554570	`PF30361`	TRM82_WD	15	33	0.0036	16.9
TkA03G554570	`PF24814`	WD40_Prp19	16	159	1.2e-22	81.0
TkA03G554570	`PF24017`	Beta-prop_SCAP	16	118	2.9e-06	27.1
TkA03G554570	`PF23609`	Beta-prop_EIPR1	17	75	1.3e-07	32.1
TkA03G554570	`PF29630`	ASA1	17	76	3.4e-05	23.6
TkA03G554570	`PF25174`	Beta-prop_THOC3	18	126	2.6e-50	171.7
TkA03G554570	`PF23381`	Beta-prop_IFT122_1st	18	125	8.5e-39	134.3
TkA03G554570	`PF25173`	Beta-prop_WDR3_1st	18	159	3.3e-30	105.9
TkA03G554570	`PF24807`	WD40_CDC20-Fz	18	58	9.2e-24	85.0
TkA03G554570	`PF24817`	WD40_WDHD1_1st	18	85	2.7e-19	70.2
TkA03G554570	`PF24805`	EIF3I	18	38	4.5e-17	62.9
TkA03G554570	`PF25048`	Beta-prop_TEP1_C	18	39	9.3e-14	51.9
TkA03G554570	`PF23409`	Beta-prop_EML	18	96	8.8e-09	35.9
TkA03G554570	`PF00400`	WD40	19	32	3.9e-39	132.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FLX9`	Arabidopsis thaliana	sp\|Q9FLX9\|NLE1_ARATH Notchless protein homolog	84.400%	Swiss-Prot	Medium

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