TkA03G554050 | RubberDandelionOmics

Gene overview

TkA03G554050

Reference: TK1151 Chr: Chr03 Coordinates: 140253858-140272011 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1379 bp · TkA03G554050|TK1151|cDNA

GAGGTTTTGAAGCAAGGTGTGATGGAGGCCAAAAGCAAAATGCGATTCTCTTTCATCATCGTCTTGTTCATACTGCAATCACACATGTTGCCATTTTCATATTCCAAGTCGATCGTCAAAAACCTCCCTGGATTTTCCGGCAAGCTTCCATTTACGCTTGAAACAGGATATGTTGGAGTCGGAAAAGATGAAGAAGTGCAATTGTTCTACTACTTTGTGGAGTCTAAAAGAAATCCGGAGAAAGATCCGTTGCTCCTTTA...

CDS

Download CDS FASTA

987 bp · TkA03G554050|TK1151|CDS

ATGGAGGCCAAAAGCAAAATGCGATTCTCTTTCATCATCGTCTTGTTCATACTGCAATCACACATGTTGCCATTTTCATATTCCAAGTCGATCGTCAAAAACCTCCCTGGATTTTCCGGCAAGCTTCCATTTACGCTTGAAACAGGATATGTTGGAGTCGGAAAAGATGAAGAAGTGCAATTGTTCTACTACTTTGTGGAGTCTAAAAGAAATCCGGAGAAAGATCCGTTGCTCCTTTATCTCACCGGCGGCCCTGGAAC...

Protein

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328 aa · TkA03G554050|TK1151|PROTEIN

MEAKSKMRFSFIIVLFILQSHMLPFSYSKSIVKNLPGFSGKLPFTLETGYVGVGKDEEVQLFYYFVESKRNPEKDPLLLYLTGGPGTSGIVPFIYQIGPLIFKYANVKRTKVKLELNPYSWTKTANVIFIDLTVGTGFSYAKTLESSGSSDSLVITHAYDFIKKVAYGISYMRIIIPNVVSKIYNGNEQKVQPKLNIKGLLIVNPLTDKFIDFNSRVEFAYRMALLEDEAKKYCGGKYIYVDPNNTRCLKSLRPVNECLA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G554050`
TK1151 ID	TkA03G554050
OH-1004 ID	LXL04_010885
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	69.000
Protein coverage (%)	TK1151 93.293 / OH-1004 68.056 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G554050

Location Chr03:140253858-140272011 (+)

Description Similar to SCPL2: Serine carboxypeptidase-like 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g73270`	Probable carboxypeptidase.	No verified direct reference in this release
`At1g73300`	Probable carboxypeptidase.	No verified direct reference in this release
`At5g36180`	Probable carboxypeptidase.	No verified direct reference in this release
`At1g73280`	Probable carboxypeptidase.	No verified direct reference in this release
`At2g22980`	Catalyzes the formation of 1,2-bis-O-sinapoyl beta-D-glucoside.	Related Arabidopsis serine carboxypeptidase-like sinapoylglucose acyltransferases display distinct but overlapping substrate specificities.2007 · DOI: 10.1104/pp.107.098970

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010885 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0019748 secondary metabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004185 serine-type carboxypeptidase activity Molecular Function

GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups Molecular Function

GO:0016752 sinapoyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G73280

ath:AT1G73300

ath:AT3G10450

ath:AT3G12203

ath:AT5G36180

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.545

Rank 1 · TkA03G554050 · TK1151

Lysosome / Vacuole0.218

Rank 2 · TkA03G554050 · TK1151

Endoplasmic reticulum0.085

Rank 3 · TkA03G554050 · TK1151

Cytoplasm0.076

Rank 4 · TkA03G554050 · TK1151

Cell membrane0.054

Rank 5 · TkA03G554050 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09680YjcZ_29-18 aa

PF00450Peptidase_S1036-310 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G554050	`PF09680`	YjcZ_2	9	18	0.68	10.3
TkA03G554050	`PF00450`	Peptidase_S10	36	310	1.4e-59	203.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9CAU0`	Arabidopsis thaliana	sp\|Q9CAU0\|SCP6_ARATH Serine carboxypeptidase-like 6	44.900%	Swiss-Prot	Medium
`Q9CAU3`	Arabidopsis thaliana	sp\|Q9CAU3\|SCPL2_ARATH Serine carboxypeptidase-like 2	44.800%	Swiss-Prot	Medium
`Q8RWJ6`	Arabidopsis thaliana	sp\|Q8RWJ6\|SCP1_ARATH Serine carboxypeptidase-like 1	44.400%	Swiss-Prot	Medium
`Q9CAU1`	Arabidopsis thaliana	sp\|Q9CAU1\|SCP3_ARATH Serine carboxypeptidase-like 3	42.400%	Swiss-Prot	Medium
`Q8H780`	Arabidopsis thaliana	sp\|Q8H780\|SCP13_ARATH Serine carboxypeptidase-like 13	39.800%	Swiss-Prot	Medium

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