TkA03G552230 | RubberDandelionOmics

Gene overview

TkA03G552230

Reference: TK1151 Chr: Chr03 Coordinates: 139810455-139812128 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1149 bp · TkA03G552230|TK1151|cDNA

TACAAAGACATATAATGCTCCCACAAATATCCAATCTCCAACTGGGTTCCCGGAGAAATGGATTTGCCGTTGCCGACTACAACTGCTCTTTTCCGGCCACCTGCAACTTCATATCTTCCGCCTTCTTCATCAACCTTCGTTTTCCCCTTACATATTCAAGAAATGGAATTCGATGCTCCGCGACAACCTTTACATCACCCCAACAGATAAACGAAACAGTATTAGAAAACAAGAAATACGACTTGTTGAAAGCAGTTCAA...

CDS

Download CDS FASTA

885 bp · TkA03G552230|TK1151|CDS

ATGCTCCCACAAATATCCAATCTCCAACTGGGTTCCCGGAGAAATGGATTTGCCGTTGCCGACTACAACTGCTCTTTTCCGGCCACCTGCAACTTCATATCTTCCGCCTTCTTCATCAACCTTCGTTTTCCCCTTACATATTCAAGAAATGGAATTCGATGCTCCGCGACAACCTTTACATCACCCCAACAGATAAACGAAACAGTATTAGAAAACAAGAAATACGACTTGTTGAAAGCAGTTCAAGATACTGAGCGCGG...

Protein

Download Protein FASTA

294 aa · TkA03G552230|TK1151|PROTEIN

MLPQISNLQLGSRRNGFAVADYNCSFPATCNFISSAFFINLRFPLTYSRNGIRCSATTFTSPQQINETVLENKKYDLLKAVQDTERGFLTTPNQRSEIEETLVDLESYGVGNEAIDLEKLDGTWRLQYTSASDVLVLLDSSSRLPFFQIGQIFQKFECKGKDDGGYIRNVVRWSIPRLLEENEGATLLVSAKFSIVSRRNIYLQFEEISLQNINISDELQALIAPALLPRSFLTLQILQAIRNFKAQIPVSTTSPGRQSV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G552230`
TK1151 ID	TkA03G552230
OH-1004 ID	LXL04_010854
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	87.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G552230

Location Chr03:139810455-139812128 (-)

Description Similar to PAP10: Probable plastid-lipid-associated protein 10, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g46910`	Probable plastid-lipid-associated protein 10, chloroplastic.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010854 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009409 response to cold Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010117 photoprotection Biological Process

GO:0010205 photoinhibition Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009536 plastid Cellular Component

GO:0009570 chloroplast stroma Cellular Component

KEGG gene cross-reference

ath:AT2G46910

ath:AT4G04020

ath:AT4G22240

brp:103858647

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.986

Rank 1 · TkA03G552230 · TK1151

Nucleus0.023

Rank 2 · TkA03G552230 · TK1151

Mitochondrion0.021

Rank 3 · TkA03G552230 · TK1151

Cytoplasm0.018

Rank 4 · TkA03G552230 · TK1151

Peroxisome0.012

Rank 5 · TkA03G552230 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04755PAP_fibrillin73-287 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G552230	`PF04755`	PAP_fibrillin	73	287	6.1e-25	89.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8W4F1`	Arabidopsis thaliana	sp\|Q8W4F1\|PAP10_ARATH Probable plastid-lipid-associated protein 10, chloroplastic	72.100%	Swiss-Prot	High

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