TkA03G545110 | RubberDandelionOmics

Gene overview

TkA03G545110

Reference: TK1151 Chr: Chr03 Coordinates: 137502612-137504556 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1435 bp · TkA03G545110|TK1151|cDNA

TCATCTGTTACGTTTACCATTAGAAAGTCACTGTACCACTTCCACCGCTATATATTCCCCATTGCGCACCTCACATTTGCATCCATATTTTCCATCTAACAATTAATTCACCTCAAAACACACACAGTGATCGCCGATGGGGAGTTCGCCTGAGACGGAGCATCCAGTGAAAGCCTTGGGCTACGCCGCCAGAGACACTTCCGGTGTACTCTCCCCCATTAACTTCTCCCGGAGGGAAACTGGAGATGAAGATGTGAGAT...

CDS

Download CDS FASTA

1074 bp · TkA03G545110|TK1151|CDS

ATGGGGAGTTCGCCTGAGACGGAGCATCCAGTGAAAGCCTTGGGCTACGCCGCCAGAGACACTTCCGGTGTACTCTCCCCCATTAACTTCTCCCGGAGGGAAACTGGAGATGAAGATGTGAGATTCAAAGTGTTGTACTGTGGAGTCTGTCACTCTGATCTTCATTCCGTCAAAAACGAATGGTACAACGCCAAGTACCCAATGATCCCCGGCCATGAGATTGTGGGCGTAGTGACTGAAGTCGGGAAAAATGTAAAAAA...

Protein

Download Protein FASTA

357 aa · TkA03G545110|TK1151|PROTEIN

MGSSPETEHPVKALGYAARDTSGVLSPINFSRRETGDEDVRFKVLYCGVCHSDLHSVKNEWYNAKYPMIPGHEIVGVVTEVGKNVKKVKIGDKVGVGCIVGSCHSCDQCGADQEQYCPKMVQTYNDHTMVTYGGYSDHMVANEHFIISWPKDYPLDGGAPLLCAGITVYSPIRFYGLDKPNMHVGVVGLGGLGHVAVKFLKALGVKVTVISTSPNKKEEAVNNFGADSFLVSRDQEQMAGGVGSLDGIIDTVSADHALVP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G545110`
TK1151 ID	TkA03G545110
OH-1004 ID	LXL04_010723
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA03G545110`
Location	Chr03:137502612-137504556 (+)
Description	Similar to CAD: Probable mannitol dehydrogenase
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_010723` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0009809 lignin biosynthetic process Biological Process GO:0009820 alkaloid metabolic process Biological Process GO:0005737 cytoplasm Cellular Component GO:0008270 zinc ion binding Molecular Function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Molecular Function GO:0045551 cinnamyl-alcohol dehydrogenase activity Molecular Function GO:0046029 mannitol dehydrogenase activity Molecular Function GO:0047924 geraniol dehydrogenase activity Molecular Function GO:0050624 vomilenine reductase activity Molecular Function
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.722

Rank 1 · TkA03G545110 · TK1151

Nucleus0.271

Rank 2 · TkA03G545110 · TK1151

Mitochondrion0.104

Rank 3 · TkA03G545110 · TK1151

Peroxisome0.069

Rank 4 · TkA03G545110 · TK1151

Cell membrane0.066

Rank 5 · TkA03G545110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08240ADH_N36-150 aa

PF00070Pyr_redox70-90 aa

PF21799MurD-like_N118-148 aa

PF028262-Hacid_dh_C174-222 aa

PF00899ThiF181-206 aa

PF13241NAD_binding_7181-219 aa

PF01262AlaDh_PNT_C182-254 aa

PF22660RS_preATP-grasp-like182-223 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G545110	`PF08240`	ADH_N	36	150	8.3e-26	91.0
TkA03G545110	`PF00070`	Pyr_redox	70	90	0.061	14.6
TkA03G545110	`PF21799`	MurD-like_N	118	148	0.016	16.2
TkA03G545110	`PF02826`	2-Hacid_dh_C	174	222	2.4e-05	24.5
TkA03G545110	`PF00899`	ThiF	181	206	0.024	14.5
TkA03G545110	`PF13241`	NAD_binding_7	181	219	0.17	13.2
TkA03G545110	`PF01262`	AlaDh_PNT_C	182	254	0.00012	22.3
TkA03G545110	`PF22660`	RS_preATP-grasp-like	182	223	0.0061	17.6
TkA03G545110	`PF01488`	Shikimate_DH	182	259	0.089	13.6
TkA03G545110	`PF00070`	Pyr_redox	183	215	0.061	14.6
TkA03G545110	`PF02737`	3HCDH_N	183	225	0.13	12.8
TkA03G545110	`PF21799`	MurD-like_N	184	216	0.016	16.2
TkA03G545110	`PF03446`	NAD_binding_2	184	257	0.017	15.9
TkA03G545110	`PF16912`	Glu_dehyd_C	185	278	0.003	17.8
TkA03G545110	`PF02254`	TrkA_N	186	224	0.079	14.0
TkA03G545110	`PF00107`	ADH_zinc_N	191	314	7.8e-20	71.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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