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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G544230
Reference: TK1151 Chr: Chr03 Coordinates: 137249857-137253833 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3451 bp · TkA03G544230|TK1151|cDNA

CTGACACTCACACATCCCTAATTTCTTTGCAGTTTTTTCTTAAGAACCTCTCCCGATAACGATTTGATTATTAGAAGATCCATCAAGAAAACCTTCAATGGCGTCTTCTTCAACTTCATCCAATCAAAAAAGCTTTAAGTATCATGTGTTCTTAAGCTTTAGAGGAGAAGACACACGTAAGTCCTTTGTTGATCATCTGTACGCTTCTCTTAAGCAACAAGGTATTCACACCTTCAGAGATAACGAGGAACTTAAGAAAG...

CDS

Download CDS FASTA

2973 bp · TkA03G544230|TK1151|CDS

ATGGCGTCTTCTTCAACTTCATCCAATCAAAAAAGCTTTAAGTATCATGTGTTCTTAAGCTTTAGAGGAGAAGACACACGTAAGTCCTTTGTTGATCATCTGTACGCTTCTCTTAAGCAACAAGGTATTCACACCTTCAGAGATAACGAGGAACTTAAGAAAGGAAAGCAGATCGATCAGCTCTTTAACGCCATTGAAGAGTCCAGGTTCTTCATCATCATTTTCTCCCAAACCTATGCATCTTCTTCTTGGTGTTTAAA...

Protein

Download Protein FASTA

990 aa · TkA03G544230|TK1151|PROTEIN

MASSSTSSNQKSFKYHVFLSFRGEDTRKSFVDHLYASLKQQGIHTFRDNEELKKGKQIDQLFNAIEESRFFIIIFSQTYASSSWCLKEVTKIMECQDGNEQIAYPLFYDVEPSDIRHQTGPVGTAIAKHKGKEQIKNWEMALESASNLDGWDLKNIANGHEAEAIKTIVDKISLKLRSIHLSNDENLIGMDRRVQELESSLGIGFNDKPRMIGIKGMGGIGKTTLARVIFDDVSSYFEASIFVEGIREVSKKKGLESLQE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G544230
TK1151 IDTkA03G544230
OH-1004 IDLXL04_010640
Relationship / confidenceMulti Candidate From Tk1151 / Complex relationship
Protein identity (%)72.800
Protein coverage (%)TK1151 99.697 / OH-1004 32.446
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G544230
LocationChr03:137249857-137253833 (+)
DescriptionSimilar to RUN1: Disease resistance protein RUN1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g12010 TIR-NB-LRR receptor-like protein involved in plant defense.
Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.2017 · DOI: 10.1016/j.chom.2017.03.005

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010640 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007165 signal transduction Biological Process
GO:0019677 NAD+ catabolic process Biological Process
GO:0043068 positive regulation of programmed cell death Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0003953 NAD+ nucleosidase activity Molecular Function
GO:0043531 ADP binding Molecular Function
GO:0050135 NADP+ nucleosidase activity Molecular Function
GO:0061809 NAD+ nucleosidase activity, cyclic ADP-ribose generating Molecular Function
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.383
Rank 1 · TkA03G544230 · TK1151
Cytoplasm0.352
Rank 2 · TkA03G544230 · TK1151
Nucleus0.254
Rank 3 · TkA03G544230 · TK1151
Endoplasmic reticulum0.089
Rank 4 · TkA03G544230 · TK1151
Plastid0.058
Rank 5 · TkA03G544230 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00931NB-ARC7-74 aa
PF01582TIR14-186 aa
PF13676TIR_217-110 aa
PF20720nSTAND353-81 aa
PF25019LRR_R13L1-DRL21167-187 aa
PF12799LRR_4175-183 aa
PF13191AAA_16187-245 aa
PF00931NB-ARC206-361 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G544230PF00931NB-ARC7748e-2588.1
TkA03G544230PF01582TIR141866.6e-46157.1
TkA03G544230PF13676TIR_2171101.2e-1558.8
TkA03G544230PF20720nSTAND353810.212.1
TkA03G544230PF25019LRR_R13L1-DRL211671875.1e-0833.6
TkA03G544230PF12799LRR_41751832.6e-1350.5
TkA03G544230PF13191AAA_161872450.0117.1
TkA03G544230PF00931NB-ARC2063618e-2588.1
TkA03G544230PF25199nSTAND_NTPase52062250.01515.8
TkA03G544230PF20720nSTAND32092490.212.1
TkA03G544230PF13401AAA_222103090.1213.4
TkA03G544230PF13173AAA_142103230.2212.2
TkA03G544230PF05729NACHT2113360.0001122.8
TkA03G544230PF25199nSTAND_NTPase52893280.01515.8
TkA03G544230PF25013LRR_Zer-14094270.0003921.3
TkA03G544230PF25019LRR_R13L1-DRL214144715.1e-0833.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SZ66Arabidopsis thalianasp|Q9SZ66|DSC1_ARATH Disease resistance-like protein DSC132.200%Swiss-ProtMedium

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