TkA03G539750 | RubberDandelionOmics

Gene overview

TkA03G539750

Reference: TK1151 Chr: Chr03 Coordinates: 135942451-135947430 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2708 bp · TkA03G539750|TK1151|cDNA

AAGTTCTGTATGTGAATTGTGAATCGTTTGTTCTTTGAATTATCAACGAGCGTCAATAATAAGGTCCCGCACGTTTCTTTAAACAATCAAACAACCGAATTCAACGAACATCTTCACACTCTTCCTCAATCACTCAACGGTTTCCAGAATCCCCAATTTGGTCGTCGATGTTGCATCTCTTTCTTGCTGATCGTATCAATGCGGCTATTAATCTACTAGCATCACAATGACCGGGGGGTTTGACATCAAGCAGGTGAGAT...

CDS

Download CDS FASTA

1218 bp · TkA03G539750|TK1151|CDS

ATGACCGGGGGGTTTGACATCAAGCAGGTGAGATGGAGCGCTATGTTTTTAGGGATTTCGAATCTACTATCGATAATCATCAACATCATTTTGATCACTGCGGCTTATCCGGTTTGTGCCTTTAGAGATATTATTCCTTTTATCGTGATTCTTGTGGTCTCGTGTTTGAGGATAATCACGATGATTCCGATCGCAATTGCGCAAAGAGCTACGGCCATGACGATTATCAATACTCCCAACGAAAAACGAGCTATTGGAAC...

Protein

Download Protein FASTA

405 aa · TkA03G539750|TK1151|PROTEIN

MTGGFDIKQVRWSAMFLGISNLLSIIINIILITAAYPVCAFRDIIPFIVILVVSCLRIITMIPIAIAQRATAMTIINTPNEKRAIGTLVRRHRRIRYRKWIRWTRFAFVITMVQFMGACYLIFNISKNVFEDRTPNACILGLLSTDNILLHSMLVAFIIMVCFVTMVQCFSGSDVLRWRSFYTNENKAWKYHYHEVFDHGIREALCCLGRVKYLSAMEEDEVFSVAQLLGDLVAYRASGKGHLELLAGLALLQRESRMPN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G539750`
TK1151 ID	TkA03G539750
OH-1004 ID	LXL04_010644
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 55.252 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA03G539750`
Location	Chr03:135942451-135947430 (-)
Description	Similar to DAGLA: Sn1-specific diacylglycerol lipase alpha
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_010644` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006690 icosanoid metabolic process Biological Process GO:0010898 positive regulation of triglyceride catabolic process Biological Process GO:0019369 arachidonate metabolic process Biological Process GO:0045471 response to ethanol Biological Process GO:0046340 diacylglycerol catabolic process Biological Process GO:0071926 endocannabinoid signaling pathway Biological Process GO:1901696 cannabinoid biosynthetic process Biological Process GO:0005654 nucleoplasm Cellular Component GO:0005765 lysosomal membrane Cellular Component GO:0005886 plasma membrane Cellular Component GO:0031901 early endosome membrane Cellular Component GO:0004465 lipoprotein lipase activity Molecular Function
KEGG gene cross-reference	hsa:221955 hsa:747 mmu:231871 mmu:269060 rno:309207 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.380

Rank 1 · TkA03G539750 · TK1151

Lysosome / Vacuole0.268

Rank 2 · TkA03G539750 · TK1151

Endoplasmic reticulum0.176

Rank 3 · TkA03G539750 · TK1151

Cytoplasm0.150

Rank 4 · TkA03G539750 · TK1151

Golgi apparatus0.127

Rank 5 · TkA03G539750 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24057DUF73587-235 aa

PF11374DUF317611-39 aa

PF27516YCO2108-113 aa

PF27516YCO2147-167 aa

PF11374DUF3176152-213 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G539750	`PF24057`	DUF7358	7	235	5.8e-94	314.8
TkA03G539750	`PF11374`	DUF3176	11	39	0.075	14.0
TkA03G539750	`PF27516`	YCO2	108	113	0.47	10.6
TkA03G539750	`PF27516`	YCO2	147	167	0.47	10.6
TkA03G539750	`PF11374`	DUF3176	152	213	0.075	14.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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