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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G537020
Reference: TK1151 Chr: Chr03 Coordinates: 135153627-135154688 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1032 bp · TkA03G537020|TK1151|cDNA

ATGGATTTAGGAACCCCTCCGCCGCCGTTAATCCCCATTGAAGCCAACCCAACCATTACATCCCCCAACATTCCTCAAGTTTACAACAATGGCGGTAGTACTGCAACAGACGACGCCATATCACACCAACACCACCGGTCTTCAGTAATCATAGTGATGATTGTTATCTCTTCCGCCATTATAATCTCAGCCACTATTTACCTCCTCATCCGCTTCCTCTCTCGCCGCTGCAACCGCACTACGTTTTCCCCGGCTGACGA...

CDS

Download CDS FASTA

1032 bp · TkA03G537020|TK1151|CDS

ATGGATTTAGGAACCCCTCCGCCGCCGTTAATCCCCATTGAAGCCAACCCAACCATTACATCCCCCAACATTCCTCAAGTTTACAACAATGGCGGTAGTACTGCAACAGACGACGCCATATCACACCAACACCACCGGTCTTCAGTAATCATAGTGATGATTGTTATCTCTTCCGCCATTATAATCTCAGCCACTATTTACCTCCTCATCCGCTTCCTCTCTCGCCGCTGCAACCGCACTACGTTTTCCCCGGCTGACGA...

Protein

Download Protein FASTA

343 aa · TkA03G537020|TK1151|PROTEIN

MDLGTPPPPLIPIEANPTITSPNIPQVYNNGGSTATDDAISHQHHRSSVIIVMIVISSAIIISATIYLLIRFLSRRCNRTTFSPADDVVSNNRNENEHVRHHVISVGGNNEVESLSLPLFTFSSMTGKIAGGDCAVCLSKFKGIDQLRLLPLCCHAFHAQCIDVWLKSNQTCPLCRSTVNPTEDDVLNKIVAATTGGGGNSFRIEIGTISQRREPSDSARRSYSIGSYDYVLDDGYEISIDSTHRRGVSDCTSVDKDSTT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G537020
TK1151 IDTkA03G537020
OH-1004 IDLXL04_010603
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)95.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G537020
LocationChr03:135153627-135154688 (+)
DescriptionSimilar to ATL4: E3 ubiquitin-protein ligase ATL4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g60220 E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro. No verified direct reference in this release
At5g40250 RING-H2 finger protein ATL46. No verified direct reference in this release
At3g48030 RING-H2 finger protein ATL48. No verified direct reference in this release
At2g18650 May be involved in female gametophyte development. No verified direct reference in this release
At1g23980 RING-H2 finger protein ATL47. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010603 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0016567 protein ubiquitination Biological Process
GO:0005634 nucleus Cellular Component
GO:0016020 membrane Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT2G20030
ath:AT3G48030
ath:AT3G60220
ath:AT4G28890
ath:AT5G40250
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.468
Rank 1 · TkA03G537020 · TK1151
Nucleus0.238
Rank 2 · TkA03G537020 · TK1151
Cytoplasm0.203
Rank 3 · TkA03G537020 · TK1151
Endoplasmic reticulum0.131
Rank 4 · TkA03G537020 · TK1151
Lysosome / Vacuole0.101
Rank 5 · TkA03G537020 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF15345TMEM5118-90 aa
PF14446Prok-RING_179-90 aa
PF12861zf-ANAPC11132-179 aa
PF29452FAR1_N132-145 aa
PF13639zf-RING_2133-176 aa
PF17123zf-RING_11133-162 aa
PF13920zf-C3HC4_3133-180 aa
PF14446Prok-RING_1133-162 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G537020PF15345TMEM5118900.05713.9
TkA03G537020PF14446Prok-RING_179900.08413.8
TkA03G537020PF12861zf-ANAPC111321791.8e-0525.4
TkA03G537020PF29452FAR1_N1321450.003817.9
TkA03G537020PF13639zf-RING_21331768e-1349.2
TkA03G537020PF17123zf-RING_111331623.8e-0936.8
TkA03G537020PF13920zf-C3HC4_31331800.006317.0
TkA03G537020PF14446Prok-RING_11331620.08413.8
TkA03G537020PF17120zf-RING_161331730.112.9
TkA03G537020PF13923zf-C3HC4_21341751.2e-0525.7
TkA03G537020PF00097zf-C3HC41341753.7e-0524.2
TkA03G537020PF13445zf-RING_UBOX1341730.001419.3
TkA03G537020PF29452FAR1_N1341920.003817.9
TkA03G537020PF14634zf-RING_51341760.006417.2
TkA03G537020PF24921RING_XB3-XBAT311341795.08.0
TkA03G537020PF12678zf-rbx11521768e-0833.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LY41Arabidopsis thalianasp|Q9LY41|ATL4_ARATH E3 ubiquitin-protein ligase ATL452.900%Swiss-ProtMedium
Q9FL07Arabidopsis thalianasp|Q9FL07|ATL46_ARATH RING-H2 finger protein ATL4631.100%Swiss-ProtLow
Q7X843Arabidopsis thalianasp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL4837.100%Swiss-ProtLow
Q9ZV53Arabidopsis thalianasp|Q9ZV53|ATL49_ARATH Putative RING-H2 finger protein ATL4956.900%Swiss-ProtLow
Q8GW38Arabidopsis thalianasp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL4756.300%Swiss-ProtLow

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