TkA03G533970 | RubberDandelionOmics

Gene overview

TkA03G533970

Reference: TK1151 Chr: Chr03 Coordinates: 134298413-134299723 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1176 bp · TkA03G533970|TK1151|cDNA

TGGGTATATAGCAGGTGGATAAGAAAGGCTGTCTTTCTTCTTCCTCCTTCGCTAATGTTATCCCTTCAAATCTTCTCCATCTGAAACCCCACTCTCTTTCTCACACTCCAAGAGACTAAACCAGAAGAAGCCATGTCCGTCGCTGGCCGGATTTCCTCAATTACAACCACTATCACACCTCAATCTCGCTCCTCCTCTTGCTCACCCGCCGCAATCCTCCCTCTCCGCCTTCATAAACCCCGAACAAACCATGCCTCTCT...

CDS

Download CDS FASTA

888 bp · TkA03G533970|TK1151|CDS

ATGTCCGTCGCTGGCCGGATTTCCTCAATTACAACCACTATCACACCTCAATCTCGCTCCTCCTCTTGCTCACCCGCCGCAATCCTCCCTCTCCGCCTTCATAAACCCCGAACAAACCATGCCTCTCTCCGCTGCTCCAACTCCTCCTTCCTCAACCCTATCCGAATAACCCCTATCACAACCACCAAATCCCTCAGCCGCAGACCCACCTCCATCCAAATGAGCATGGAAGCTGGAATCGGGCTAATGGGCACCAAATT...

Protein

Download Protein FASTA

295 aa · TkA03G533970|TK1151|PROTEIN

MSVAGRISSITTTITPQSRSSSCSPAAILPLRLHKPRTNHASLRCSNSSFLNPIRITPITTTKSLSRRPTSIQMSMEAGIGLMGTKLGMMTYFESNGKVVPVTVIGFREGNLVTQVKTEDTDGYNAVQVGYRRVRDKKLTKPEMGHLEKSGIIPLRHLQEFRLQSVEGFEPNQKLVLEELFNEGDLVDVSGTTIGKGFQGGIKRYNFKRGPMSHGSKSHRALGSIGAGTTPGRVYPGKKMPGRMGGTKTKIRKLKVVKID...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G533970`
TK1151 ID	TkA03G533970
OH-1004 ID	LXL04_010528
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G533970

Location Chr03:134298413-134299723 (+)

Description Similar to RPL3: 50S ribosomal protein L3, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g43030`	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010528 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006412 translation Biological Process

GO:0005829 cytosol Cellular Component

GO:0005840 ribosome Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0022625 cytosolic large ribosomal subunit Cellular Component

GO:1990904 ribonucleoprotein complex Cellular Component

GO:0003729 mRNA binding Molecular Function

GO:0003735 structural constituent of ribosome Molecular Function

GO:0019843 rRNA binding Molecular Function

KEGG gene cross-reference

amr:AM1_4696

ath:AT2G43030

tel:tlr0081

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.957

Rank 1 · TkA03G533970 · TK1151

Mitochondrion0.074

Rank 2 · TkA03G533970 · TK1151

Cytoplasm0.015

Rank 3 · TkA03G533970 · TK1151

Nucleus0.012

Rank 4 · TkA03G533970 · TK1151

Cell membrane0.005

Rank 5 · TkA03G533970 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00297Ribosomal_L380-95 aa

PF00297Ribosomal_L3174-261 aa

PF00297Ribosomal_L3265-287 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G533970	`PF00297`	Ribosomal_L3	80	95	1.1e-16	61.5
TkA03G533970	`PF00297`	Ribosomal_L3	174	261	1.1e-16	61.5
TkA03G533970	`PF00297`	Ribosomal_L3	265	287	1.1e-16	61.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SKX4`	Arabidopsis thaliana	sp\|Q9SKX4\|RK3A_ARATH Large ribosomal subunit protein uL3c	67.900%	Swiss-Prot	High

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