TkA03G531710 | RubberDandelionOmics

Gene overview

TkA03G531710

Reference: TK1151 Chr: Chr03 Coordinates: 133721420-133722386 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

848 bp · TkA03G531710|TK1151|cDNA

TTTCAACGTTTTACAATCCATTTGATCTCACAAATAATGGAGGCCTTTTTAAATGAGTTTGAACATCTTAAACACTTCAGCTTGGAAGAGATAAAGTTAATCACAGGCGACTTTGACGACAACAAAGTTATTGGAGTGGGTTCGGGAAGGTGTACGAATTAAGGATCGCTCTCCGGCTCTAAAGGGGAAAAAATGGTTGCGTGTAAGCGTCTGAGTAGCAGCTGTGGACAAGGAAACCCTGAGTTCTTGAAAGAGATCTT...

CDS

Download CDS FASTA

405 bp · TkA03G531710|TK1151|CDS

ATGGTTGCGTGTAAGCGTCTGAGTAGCAGCTGTGGACAAGGAAACCCTGAGTTCTTGAAAGAGATCTTCATGCTTTCTTGTTACACACATGAAAATCTCATCTCTCTCTTGGGATTTTGCGACGAGAACGGTGAGAAGATCCTTGTGTACGAGCATGCATCTCATGGAAGCCTTGATCGACATTTGGGTAGCACTACTCTCACGTGGACACAACGTCTCAAGATATGCCTTGGGGCTGCAAACGGATTGTACTACCTTCA...

Protein

Download Protein FASTA

134 aa · TkA03G531710|TK1151|PROTEIN

MVACKRLSSSCGQGNPEFLKEIFMLSCYTHENLISLLGFCDENGEKILVYEHASHGSLDRHLGSTTLTWTQRLKICLGAANGLYYLHDPKETQQRVIHRDIKSSNILLDDSWTAKVSDMGLAKLGPANQLQPML

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G531710`
TK1151 ID	TkA03G531710
OH-1004 ID	LXL04_011396
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	82.100
Protein coverage (%)	TK1151 100.000 / OH-1004 15.746 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G531710

Location Chr03:133721420-133722386 (-)

Description Similar to At5g38990: Probable receptor-like protein kinase At5g38990

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g46290`	Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.	Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106
`At5g24010`	Probable receptor-like protein kinase At5g24010.	No verified direct reference in this release
`At3g51550`	May regulate MLO7 polarization in female gametophyte synergid cells to control pollen tube growth and male gamete delivery during fertilization.	FERONIA receptor-like kinase regulates RHO GTPase signaling of root hair development.2010 · DOI: 10.1073/pnas.1005366107
`At5g59700`	Probable receptor-like protein kinase At5g59700.	No verified direct reference in this release
`At3g24790`	May be involved in plant defense signaling.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011396 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009723 response to ethylene Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0010038 response to metal ion Biological Process

GO:0010118 stomatal movement Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0030308 negative regulation of cell growth Biological Process

KEGG gene cross-reference

ath:AT1G30570

ath:AT3G51550

ath:AT5G28680

ath:AT5G38990

ath:AT5G39000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.475

Rank 1 · TkA03G531710 · TK1151

Cytoplasm0.448

Rank 2 · TkA03G531710 · TK1151

Nucleus0.234

Rank 3 · TkA03G531710 · TK1151

Golgi apparatus0.055

Rank 4 · TkA03G531710 · TK1151

Endoplasmic reticulum0.048

Rank 5 · TkA03G531710 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714PK_Tyr_Ser-Thr2-124 aa

PF00069Pkinase2-124 aa

PF30345E_spl_m658-87 aa

PF01636APH87-110 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G531710	`PF07714`	PK_Tyr_Ser-Thr	2	124	7.9e-24	85.1
TkA03G531710	`PF00069`	Pkinase	2	124	7.7e-21	75.4
TkA03G531710	`PF30345`	E_spl_m6	58	87	0.061	14.6
TkA03G531710	`PF01636`	APH	87	110	0.11	13.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LX66`	Arabidopsis thaliana	sp\|Q9LX66\|HERK_ARATH Receptor-like protein kinase HERK 1	53.100%	Swiss-Prot	High
`Q9FLW0`	Arabidopsis thaliana	sp\|Q9FLW0\|Y5241_ARATH Probable receptor-like protein kinase At5g24010	54.700%	Swiss-Prot	High
`Q9SCZ4`	Arabidopsis thaliana	sp\|Q9SCZ4\|FERON_ARATH Receptor-like protein kinase FERONIA	52.300%	Swiss-Prot	High
`Q9FN92`	Arabidopsis thaliana	sp\|Q9FN92\|Y5597_ARATH Probable receptor-like protein kinase At5g59700	53.800%	Swiss-Prot	High
`Q9LRY1`	Arabidopsis thaliana	sp\|Q9LRY1\|PBL25_ARATH Probable serine/threonine-protein kinase PBL25	51.100%	Swiss-Prot	High

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