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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G531000
Reference: TK1151 Chr: Chr03 Coordinates: 133517415-133518905 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1491 bp · TkA03G531000|TK1151|cDNA

ATGTCATACACAATCGCAAGCTTGAGTTCTATCCTGCGAAACAGCATTCCCCGTACGGCATTCGCTCACGCTACACAAACCCATGTACAAATACTCATCCACAATCTCTGTCACGATGTCACGCTCCAAACAGATCTCTTGTTGGCTTATTCCAGAGGGTCCCTACCCAACGCCCGCAAGCTGTTCGACAGAATGCTCCAAAGAAACATGCATTCGTGGAACATCATGATTTCGGCCTACGCTCAGAACTCCATGAACAC...

CDS

Download CDS FASTA

1491 bp · TkA03G531000|TK1151|CDS

ATGTCATACACAATCGCAAGCTTGAGTTCTATCCTGCGAAACAGCATTCCCCGTACGGCATTCGCTCACGCTACACAAACCCATGTACAAATACTCATCCACAATCTCTGTCACGATGTCACGCTCCAAACAGATCTCTTGTTGGCTTATTCCAGAGGGTCCCTACCCAACGCCCGCAAGCTGTTCGACAGAATGCTCCAAAGAAACATGCATTCGTGGAACATCATGATTTCGGCCTACGCTCAGAACTCCATGAACAC...

Protein

Download Protein FASTA

496 aa · TkA03G531000|TK1151|PROTEIN

MSYTIASLSSILRNSIPRTAFAHATQTHVQILIHNLCHDVTLQTDLLLAYSRGSLPNARKLFDRMLQRNMHSWNIMISAYAQNSMNTNALNVFLKLLNSGNTPDHYSLPPVLKACTGIRDFSLGLVLHGMVIKLGFQNYVIVGSTVLDFYSKCGNLNDAKMVFKELPLRDSVTWNSMISGLSKAGLLLESLNYFKNMIKNSTKMDSMTIPTLLNTCAKLGDITKGKEVHGQVLKNTNLYNDTAIKNSLINLYSKCGCLYD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G531000
TK1151 IDTkA03G531000
OH-1004 IDLXL04_010496
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G531000
LocationChr03:133517415-133518905 (+)
DescriptionSimilar to PCMP-H34: Pentatricopeptide repeat-containing protein At3g26782, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g57430 Involved in RNA editing events in chloroplasts.
A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.2009 · DOI: 10.1105/tpc.109.071472
At3g23330 Putative pentatricopeptide repeat-containing protein At3g23330. No verified direct reference in this release
At3g46790 Required for the intergenic processing between chloroplast rsp7 and ndhB transcripts. No verified direct reference in this release
At3g11460 Involved in C-to-U editing of mitochondrial RNA.
MEF10 is required for RNA editing at nad2-842 in mitochondria of Arabidopsis thaliana and interacts with MORF8.2013 · DOI: 10.1007/s11103-012-0003-2
At2g03880 Pentatricopeptide repeat-containing protein At2g03880, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010496 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT3G26782
ath:AT3G57430
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.635
Rank 1 · TkA03G531000 · TK1151
Plastid0.185
Rank 2 · TkA03G531000 · TK1151
Nucleus0.045
Rank 3 · TkA03G531000 · TK1151
Cytoplasm0.030
Rank 4 · TkA03G531000 · TK1151
Cell membrane0.005
Rank 5 · TkA03G531000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_231-38 aa
PF29070MSC6_N43-101 aa
PF13428TPR_1450-76 aa
PF13041PPR_252-70 aa
PF01535PPR53-69 aa
PF12854PPR_153-65 aa
PF17177PPR_long54-84 aa
PF12921ATP1356-74 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G531000PF13041PPR_231383.3e-37127.1
TkA03G531000PF29070MSC6_N431012.3e-1040.8
TkA03G531000PF13428TPR_1450760.006917.7
TkA03G531000PF13041PPR_252703.3e-37127.1
TkA03G531000PF01535PPR53692.6e-47156.5
TkA03G531000PF12854PPR_153656.1e-2484.2
TkA03G531000PF17177PPR_long54841.1e-0525.7
TkA03G531000PF12921ATP1356740.005817.2
TkA03G531000PF12854PPR_165936.1e-2484.2
TkA03G531000PF13812PPR_3651042.8e-0834.4
TkA03G531000PF23276TPR_24681141.2e-0629.1
TkA03G531000PF18768RNPP_C681020.1811.9
TkA03G531000PF13041PPR_2691083.3e-37127.1
TkA03G531000PF01535PPR721002.6e-47156.5
TkA03G531000PF13812PPR_31341652.8e-0834.4
TkA03G531000PF01535PPR1441662.6e-47156.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q7Y211Arabidopsis thalianasp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic37.900%Swiss-ProtMedium
Q9LW63Arabidopsis thalianasp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g2333033.300%Swiss-ProtMedium
Q9STF3Arabidopsis thalianasp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein CRR2, chloroplastic32.500%Swiss-ProtMedium
Q9CAY1Arabidopsis thalianasp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial34.600%Swiss-ProtMedium
Q9SI53Arabidopsis thalianasp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial34.500%Swiss-ProtMedium

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