TkA03G528960 | RubberDandelionOmics

Gene overview

TkA03G528960

Reference: TK1151 Chr: Chr03 Coordinates: 132943761-132958075 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1933 bp · TkA03G528960|TK1151|cDNA

ATAAATCAGATGGAATTTCAAAAACCAATCTTGGTTGCATTCTTGCTATCAACCCTAATACTCACTGCATTTACTGATTGTACCTGTGAACTGGAAGAAAACAACGGCAACGATAGCATAGTTCTGAAGTACGAACTGATCGCACTTGCTTGCATTCTCATAGCCGGCGGAATCGGCGTTTCTCTTCCCTTCGCCGGCAATATTTTCACGGCGCTACGACCTGAGAATGATAGTTTCTTTCTGGTGAAAGCATTTGCGTC...

CDS

Download CDS FASTA

429 bp · TkA03G528960|TK1151|CDS

ATGGAATTTCAAAAACCAATCTTGGTTGCATTCTTGCTATCAACCCTAATACTCACTGCATTTACTGATTGTACCTGTGAACTGGAAGAAAACAACGGCAACGATAGCATAGTTCTGAAGTACGAACTGATCGCACTTGCTTGCATTCTCATAGCCGGCGGAATCGGCGTTTCTCTTCCCTTCGCCGGCAATATTTTCACGGCGCTACGACCTGAGAATGATAGTTTCTTTCTGGTGAAAGCATTTGCGTCCGGCGTGAT...

Protein

Download Protein FASTA

142 aa · TkA03G528960|TK1151|PROTEIN

MEFQKPILVAFLLSTLILTAFTDCTCELEENNGNDSIVLKYELIALACILIAGGIGVSLPFAGNIFTALRPENDSFFLVKAFASGVILATGFIHILPDAFESLTSPCLKEHHWGIFHLQGLCGDGGYHSNVADRDFGVSLPT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G528960`
TK1151 ID	TkA03G528960
OH-1004 ID	LXL04_010461
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	90.100
Protein coverage (%)	TK1151 85.211 / OH-1004 34.670 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G528960

Location Chr03:132943761-132958075 (+)

Description Similar to ZIP5: Zinc transporter 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g12750`	Mediates zinc uptake from the rhizosphere.	No verified direct reference in this release
`At2g32270`	Mediates zinc uptake from the rhizosphere.	No verified direct reference in this release
`At1g05300`	Probably mediates zinc uptake from the rhizosphere.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0613000`	Zinc transporter that may mediate zinc uptake from the rhizosphere.	No verified direct reference in this release
`Os05g0472700`	Zinc transporter that mediates zinc uptake from the rhizosphere and may be responsible for the translocation of zinc within the plant.	OsZIP5 is a plasma membrane zinc transporter in rice.2010 · DOI: 10.1007/s11103-010-9637-0

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010461 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006829 zinc ion transport Biological Process

GO:0071577 zinc ion transmembrane transport Biological Process

GO:1990359 stress response to zinc ion Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0005385 zinc ion transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G05300

ath:AT2G32270

ath:AT3G12750

ath:AT5G62160

dosa:Os05g0472700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.341

Rank 1 · TkA03G528960 · TK1151

Endoplasmic reticulum0.282

Rank 2 · TkA03G528960 · TK1151

Cell membrane0.214

Rank 3 · TkA03G528960 · TK1151

Cytoplasm0.108

Rank 4 · TkA03G528960 · TK1151

Golgi apparatus0.074

Rank 5 · TkA03G528960 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02535Zip40-121 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G528960	`PF02535`	Zip	40	121	7.9e-17	62.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O81123`	Arabidopsis thaliana	sp\|O81123\|ZIP1_ARATH Zinc transporter 1	47.400%	Swiss-Prot	Medium
`Q9SLG3`	Arabidopsis thaliana	sp\|Q9SLG3\|ZIP3_ARATH Zinc transporter 3	51.100%	Swiss-Prot	Medium
`O23039`	Arabidopsis thaliana	sp\|O23039\|ZIP5_ARATH Zinc transporter 5	50.000%	Swiss-Prot	Medium
`Q7XLD4`	Oryza sativa subsp. japonica	sp\|Q7XLD4\|ZIP3_ORYSJ Zinc transporter 3	53.800%	Swiss-Prot	Medium
`Q6L8G0`	Oryza sativa subsp. japonica	sp\|Q6L8G0\|ZIP5_ORYSJ Zinc transporter 5	41.700%	Swiss-Prot	Medium

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