TkA03G528580 | RubberDandelionOmics

Gene overview

TkA03G528580

Reference: TK1151 Chr: Chr03 Coordinates: 132857300-132857734 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

435 bp · TkA03G528580|TK1151|cDNA

GAAAAAAACGGCAACGATAGCACAGTTCTGAAGTACAAACTGATCGCACTTGCTTGCATTCTCATAGCCGGCGGCATCGGCGTTTCTCTTCCCTTCGCCGGCAATATTTTCCCGGCGCTACGCCCTGAGAATGACAGTTTCTTCCTGGTGAAAGCATTTGCCTCCTGGCGTGATATTGGCTACCGGATTTATTCATATACTTCCGGATGCTTTCGAGAGTTTGACTTCCCCATGTTTGAAAGAGCATCCTTGGGGGATTT...

CDS

Download CDS FASTA

435 bp · TkA03G528580|TK1151|CDS

GAAAAAAACGGCAACGATAGCACAGTTCTGAAGTACAAACTGATCGCACTTGCTTGCATTCTCATAGCCGGCGGCATCGGCGTTTCTCTTCCCTTCGCCGGCAATATTTTCCCGGCGCTACGCCCTGAGAATGACAGTTTCTTCCTGGTGAAAGCATTTGCCTCCTGGCGTGATATTGGCTACCGGATTTATTCATATACTTCCGGATGCTTTCGAGAGTTTGACTTCCCCATGTTTGAAAGAGCATCCTTGGGGGATTT...

Protein

Download Protein FASTA

144 aa · TkA03G528580|TK1151|PROTEIN

EKNGNDSTVLKYKLIALACILIAGGIGVSLPFAGNIFPALRPENDSFFLVKAFASWRDIGYRIYSYTSGCFREFDFPMFERASLGDFPFTGFVAMVATILTLLIETSASAYQLKAQRAAATKLVGGEDEEKNAGNVDVHMHACE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G528580`
TK1151 ID	TkA03G528580
OH-1004 ID	LXL04_010458
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	78.900
Protein coverage (%)	TK1151 98.611 / OH-1004 60.684 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G528580

Location Chr03:132857300-132857734 (+)

Description Similar to ZIP1: Zinc transporter 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g12750`	Mediates zinc uptake from the rhizosphere.	No verified direct reference in this release
`At2g32270`	Mediates zinc uptake from the rhizosphere.	No verified direct reference in this release
`At1g05300`	Probably mediates zinc uptake from the rhizosphere.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0472400`	Zinc transporter that may be involved in zinc uptake from the rhizosphere.	No verified direct reference in this release
`Os03g0667300`	Iron transporter that may play a role in the uptake of iron from the rhizosphere across the plasma membrane in the root epidermal layer.	Rice plants take up iron as an Fe3+-phytosiderophore and as Fe2+.2006 · DOI: 10.1111/j.1365-313x.2005.02624.x

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010458 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006829 zinc ion transport Biological Process

GO:0071577 zinc ion transmembrane transport Biological Process

GO:1990359 stress response to zinc ion Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0005385 zinc ion transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G05300

ath:AT2G32270

ath:AT3G12750

ath:AT5G62160

dosa:Os05g0472700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.318

Rank 1 · TkA03G528580 · TK1151

Golgi apparatus0.216

Rank 2 · TkA03G528580 · TK1151

Cytoplasm0.151

Rank 3 · TkA03G528580 · TK1151

Nucleus0.135

Rank 4 · TkA03G528580 · TK1151

Plastid0.129

Rank 5 · TkA03G528580 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02535Zip11-55 aa

PF02535Zip83-135 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G528580	`PF02535`	Zip	11	55	6.9e-05	22.9
TkA03G528580	`PF02535`	Zip	83	135	6.9e-05	22.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O81123`	Arabidopsis thaliana	sp\|O81123\|ZIP1_ARATH Zinc transporter 1	40.200%	Swiss-Prot	Medium
`Q9SLG3`	Arabidopsis thaliana	sp\|Q9SLG3\|ZIP3_ARATH Zinc transporter 3	35.300%	Swiss-Prot	Medium
`O23039`	Arabidopsis thaliana	sp\|O23039\|ZIP5_ARATH Zinc transporter 5	34.600%	Swiss-Prot	Medium
`Q0DHE3`	Oryza sativa subsp. japonica	sp\|Q0DHE3\|ZIP9_ORYSJ Zinc transporter 9	37.300%	Swiss-Prot	Medium
`Q6L8G1`	Oryza sativa subsp. japonica	sp\|Q6L8G1\|IRT2_ORYSJ Fe(2+) transport protein 2	34.800%	Swiss-Prot	Medium

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