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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G526930
Reference: TK1151 Chr: Chr03 Coordinates: 132260942-132262686 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1389 bp · TkA03G526930|TK1151|cDNA

ATGGAGCAGGGGTACAAGCATTTCAGCCACTCGCACAACCTGGTCATGCACCAACTGCCTGAAGGTGTCGATGTCTCGTGCTCAGGTTGCAACTCCTCCGGCACCGGCACCGTCTACGTTTGCTGGCTTTGCAACTTCTTCCTACACGAACAGTGCTACCGAGCAACACGCTCCTTCAAACATCCGTCACACCCTCCTCATCCTCTCACTTTGGTTCCTTACCCAACTTATCCCTCTAATTCCTTTTACTGTAATTCCTG...

CDS

Download CDS FASTA

1389 bp · TkA03G526930|TK1151|CDS

ATGGAGCAGGGGTACAAGCATTTCAGCCACTCGCACAACCTGGTCATGCACCAACTGCCTGAAGGTGTCGATGTCTCGTGCTCAGGTTGCAACTCCTCCGGCACCGGCACCGTCTACGTTTGCTGGCTTTGCAACTTCTTCCTACACGAACAGTGCTACCGAGCAACACGCTCCTTCAAACATCCGTCACACCCTCCTCATCCTCTCACTTTGGTTCCTTACCCAACTTATCCCTCTAATTCCTTTTACTGTAATTCCTG...

Protein

Download Protein FASTA

462 aa · TkA03G526930|TK1151|PROTEIN

MEQGYKHFSHSHNLVMHQLPEGVDVSCSGCNSSGTGTVYVCWLCNFFLHEQCYRATRSFKHPSHPPHPLTLVPYPTYPSNSFYCNSCEIIGTGLSYSCASCEFDLHVQCAYSISRATSFQNTHQYPTNYYNHDHQEQVPPIWNGQNPSVAHNTPFISVPDNLQHPVIAPQNTYVTSTGDPSVSIPTSSQNPVASVPIPTKSQSPITNDQKINMVQNIPSVSIPAASPDNQPDNDVESVKTQSNRTGTLHFSHPHTLRIIN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G526930
TK1151 IDTkA03G526930
OH-1004 IDLXL04_010427
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)77.300
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G526930
LocationChr03:132260942-132262686 (+)
DescriptionProtein of unknown function
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g17740 Essential for development of both female (megagametogenesis) and male (microgametogenesis) gametophytes by promoting the formation of large vacuoles early in development, maybe via the regulation of vesicular fusion. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010427 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002237 response to molecule of bacterial origin Biological Process
GO:0002238 response to molecule of fungal origin Biological Process
GO:0002240 response to molecule of oomycetes origin Biological Process
GO:0009561 megagametogenesis Biological Process
GO:0009617 response to bacterium Biological Process
GO:0055046 microgametogenesis Biological Process
GO:0005634 nucleus Cellular Component
GO:0005771 multivesicular body Cellular Component
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G17740
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.642
Rank 1 · TkA03G526930 · TK1151
Nucleus0.368
Rank 2 · TkA03G526930 · TK1151
Cell membrane0.106
Rank 3 · TkA03G526930 · TK1151
Endoplasmic reticulum0.085
Rank 4 · TkA03G526930 · TK1151
Lysosome / Vacuole0.049
Rank 5 · TkA03G526930 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03107C1_28-52 aa
PF00130C1_125-55 aa
PF17120zf-RING_1626-55 aa
PF00628PHD27-87 aa
PF25299ZZ_ADA227-56 aa
PF26235zf-KKT2_KKT337-53 aa
PF03107C1_262-110 aa
PF26235zf-KKT2_KKT379-114 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G526930PF03107C1_28522e-47160.0
TkA03G526930PF00130C1_125551.5e-0525.4
TkA03G526930PF17120zf-RING_1626550.0001422.1
TkA03G526930PF00628PHD27870.0001722.3
TkA03G526930PF25299ZZ_ADA227560.05114.5
TkA03G526930PF26235zf-KKT2_KKT337538.6e-0523.3
TkA03G526930PF03107C1_2621102e-47160.0
TkA03G526930PF26235zf-KKT2_KKT3791148.6e-0523.3
TkA03G526930PF00130C1_1831121.5e-0525.4
TkA03G526930PF17120zf-RING_16831110.0001422.1
TkA03G526930PF25299ZZ_ADA2841250.05114.5
TkA03G526930PF00628PHD971100.0001722.3
TkA03G526930PF03107C1_22502972e-47160.0
TkA03G526930PF26235zf-KKT2_KKT32672978.6e-0523.3
TkA03G526930PF00130C1_12692981.5e-0525.4
TkA03G526930PF17120zf-RING_162692980.0001422.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q6NQN8Arabidopsis thalianasp|Q6NQN8|VLG_ARATH Protein VACUOLELESS GAMETOPHYTES50.300%Swiss-ProtLow

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