TkA03G526670 | RubberDandelionOmics

Gene overview

TkA03G526670

Reference: TK1151 Chr: Chr03 Coordinates: 132199880-132203634 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2104 bp · TkA03G526670|TK1151|cDNA

CGGAACTCAAACCCAACAATTAACCAAAAACAAGCAATTCCCATATAGATCTCGTTCAAGTCCGCGCCTCCTCCTCCCCGTCGCCCCCTTTTGTCATCACTCTCTTCTAAACTCCAAATCAAACCCTAATTCCCCCTCAATCATTGCCTTCAAACCTTCAATCGATTCGTTACTTCCACCCACAACGCCAATTCAACCCTACGGAGGCGAACCGGCCGTCAAATTGAGTTGTGTTTTTGAACGATTCGCGTTTCTTCGAA...

CDS

Download CDS FASTA

1338 bp · TkA03G526670|TK1151|CDS

ATGGACTACGAACCTTACGATAGCAGCGGAACTGATGATGATCTTCCGCCATCTCATCAAAACAGAATCCCAAGAGGTGGACGTGTTGCAGGTAATGGAAGATCTGCAGTTATGGCTCCTGTAGTACAATATCCAAGAATGTATGCAGAAACAGACATGGAAGCCCAAATCCACCTCCTTGAACAAGAAGCATACAGCTCTGTTCTTCGAGCCTTCAAAGCCCAAGCTGATGCAATTACTTGGGAAAAAGAAGGTTTAAT...

Protein

Download Protein FASTA

445 aa · TkA03G526670|TK1151|PROTEIN

MDYEPYDSSGTDDDLPPSHQNRIPRGGRVAGNGRSAVMAPVVQYPRMYAETDMEAQIHLLEQEAYSSVLRAFKAQADAITWEKEGLITELRKELRLSNEEHRELLGKVNSDDVIRRIREWRQSGGVQSGMMNTGQAVHDPLPSPSVSASRKKQKINSSGPSQSFGVPSPSFHPQPVVPPPNQPSSSSARRAPVSGSTKGKNKKSGGQMMGGGGGSALKMQYPPSGPSGRGQIGNRVSAGPLANESAETSAFSPLIGRKVR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G526670`
TK1151 ID	TkA03G526670
OH-1004 ID	LXL04_010418
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G526670

Location Chr03:132199880-132203634 (+)

Description Similar to EML3: Protein EMSY-LIKE 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g13020`	Probably involved in the regulation of chromatin states (Probable).	No verified direct reference in this release
`At2g44440`	Probably involved in the regulation of chromatin states (Probable).	EMSY-like genes are required for full RPP7-mediated race-specific immunity and basal defense in Arabidopsis.2011 · DOI: 10.1094/mpmi-05-11-0123
`At3g12140`	Probably involved in the regulation of chromatin states (Probable).	EMSY-like genes are required for full RPP7-mediated race-specific immunity and basal defense in Arabidopsis.2011 · DOI: 10.1094/mpmi-05-11-0123
`At5g06780`	Probably involved in the regulation of chromatin states (Probable).	EMSY-like genes are required for full RPP7-mediated race-specific immunity and basal defense in Arabidopsis.2011 · DOI: 10.1094/mpmi-05-11-0123

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010418 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0009408 response to heat Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0051607 defense response to virus Biological Process

GO:0005634 nucleus Cellular Component

GO:0003682 chromatin binding Molecular Function

GO:0031491 nucleosome binding Molecular Function

KEGG gene cross-reference

ath:AT2G44440

ath:AT3G12140

ath:AT5G06780

ath:AT5G13020

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.970

Rank 1 · TkA03G526670 · TK1151

Cytoplasm0.115

Rank 2 · TkA03G526670 · TK1151

Cell membrane0.024

Rank 3 · TkA03G526670 · TK1151

Endoplasmic reticulum0.013

Rank 4 · TkA03G526670 · TK1151

Plastid0.008

Rank 5 · TkA03G526670 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25557GAUT_110-23 aa

PF29569DCT6_helical47-122 aa

PF03735ENT52-131 aa

PF14772NYD-SP2870-107 aa

PF25557GAUT_188-113 aa

PF18521TAD2135-144 aa

PF09465LBR_tudor204-217 aa

PF09465LBR_tudor255-293 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G526670	`PF25557`	GAUT_1	10	23	0.24	12.4
TkA03G526670	`PF29569`	DCT6_helical	47	122	0.25	11.9
TkA03G526670	`PF03735`	ENT	52	131	6e-31	107.0
TkA03G526670	`PF14772`	NYD-SP28	70	107	0.093	13.5
TkA03G526670	`PF25557`	GAUT_1	88	113	0.24	12.4
TkA03G526670	`PF18521`	TAD2	135	144	6.3	7.3
TkA03G526670	`PF09465`	LBR_tudor	204	217	0.18	12.3
TkA03G526670	`PF09465`	LBR_tudor	255	293	0.18	12.3
TkA03G526670	`PF18521`	TAD2	306	318	6.3	7.3
TkA03G526670	`PF29569`	DCT6_helical	381	410	0.25	11.9
TkA03G526670	`PF25557`	GAUT_1	384	418	0.24	12.4
TkA03G526670	`PF02970`	TBCA	393	424	0.057	14.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4K2F0`	Arabidopsis thaliana	sp\|F4K2F0\|EML3_ARATH Protein EMSY-LIKE 3	54.100%	Swiss-Prot	High
`Q08A72`	Arabidopsis thaliana	sp\|Q08A72\|EML4_ARATH Protein EMSY-LIKE 4	54.500%	Swiss-Prot	High
`Q9C7C4`	Arabidopsis thaliana	sp\|Q9C7C4\|EML1_ARATH Protein EMSY-LIKE 1	46.800%	Swiss-Prot	Medium
`Q9FG29`	Arabidopsis thaliana	sp\|Q9FG29\|EML2_ARATH Protein EMSY-LIKE 2	44.600%	Swiss-Prot	Medium

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