TkA03G524480 | RubberDandelionOmics

Gene overview

TkA03G524480

Reference: TK1151 Chr: Chr03 Coordinates: 131651597-131656018 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1406 bp · TkA03G524480|TK1151|cDNA

ATTTTTCACCTCGTGCCTTCTTTGATTTCTTTATAGGCACATTTGTATTGCATTCAGAGCAATCAACGTTCTTCTTTGAACACCAACTAGCATGGCTCTTGAGTTTGACCGATTACTCTTAGTCCATGCCTTTATAGTGTTATTACACGCTAGAACATTTCTGGCCTCCTCCAAACCAAAACCACAAGTCCCTTGCTACTTCATATTCGGAGACTCATTGGTCGACAATGGCACAACAATAACTTAAAACGAAGTGTAAA...

CDS

Download CDS FASTA

708 bp · TkA03G524480|TK1151|CDS

ATGTATAGGCAGTTACGTCATCATAAGTCCATAGTTTCACGAATTTTACGCTCGAAAAAGGATAAGAAGTTCCTAAGGAAATGCATCTATGTTGTTAATATAGGAAGCAACGATTACATTAACAACTACTACATGCCCGACCTTTACAATACAAGCCACATATATACCAAACGTCAATTCGCCAAAGTCCTTATAAAACAATACTCTCAATATCTAACGACTTTGTATAGTTTGGGAGGCAGGAAAATTGCAGTGTTTAG...

Protein

Download Protein FASTA

235 aa · TkA03G524480|TK1151|PROTEIN

MYRQLRHHKSIVSRILRSKKDKKFLRKCIYVVNIGSNDYINNYYMPDLYNTSHIYTKRQFAKVLIKQYSQYLTTLYSLGGRKIAVFSLAPIGCSPFYINKFGTYGTPCVEKMNEAITLFNDGLKDLVDRLNDKKSDARFTFINLGSILSPLGDVPMPNSPCCQVREDGQCVRNSIPCPMRSVSIFFDGLHPTEVSNTIIATRSYAAVSQADASPYDISHLLNFNVEYIWPNYTFF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G524480`
TK1151 ID	TkA03G524480
OH-1004 ID	LXL04_010385
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.500
Protein coverage (%)	TK1151 93.617 / OH-1004 28.683 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G524480

Location Chr03:131651597-131656018 (-)

Description Similar to At1g29670: GDSL esterase/lipase At1g29670

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g29670`	GDSL esterase/lipase At1g29670.	No verified direct reference in this release
`At1g29660`	Involved in EDS1-dependent systemic acquired resistance, maybe in phloem-mediated long-distance signaling.	No verified direct reference in this release
`At5g45670`	GDSL esterase/lipase At5g45670.	No verified direct reference in this release
`At4g18970`	GDSL esterase/lipase At4g18970.	No verified direct reference in this release
`At2g19050`	GDSL esterase/lipase At2g19050.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010385 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009627 systemic acquired resistance Biological Process

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0048046 apoplast Cellular Component

GO:0099503 secretory vesicle Cellular Component

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT1G29660

ath:AT1G29670

ath:AT5G45670

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.777

Rank 1 · TkA03G524480 · TK1151

Cytoplasm0.062

Rank 2 · TkA03G524480 · TK1151

Endoplasmic reticulum0.050

Rank 3 · TkA03G524480 · TK1151

Lysosome / Vacuole0.042

Rank 4 · TkA03G524480 · TK1151

Cell membrane0.036

Rank 5 · TkA03G524480 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657Lipase_GDSL12-201 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G524480	`PF00657`	Lipase_GDSL	12	201	2.2e-24	87.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C7N4`	Arabidopsis thaliana	sp\|Q9C7N4\|GDL15_ARATH GDSL esterase/lipase At1g29670	40.000%	Swiss-Prot	Medium
`Q9C7N5`	Arabidopsis thaliana	sp\|Q9C7N5\|GDL14_ARATH GDSL esterase/lipase At1g29660	39.100%	Swiss-Prot	Medium
`Q9FK75`	Arabidopsis thaliana	sp\|Q9FK75\|GDL82_ARATH GDSL esterase/lipase At5g45670	36.100%	Swiss-Prot	Medium
`Q93YW8`	Arabidopsis thaliana	sp\|Q93YW8\|GDL65_ARATH GDSL esterase/lipase At4g18970	37.000%	Swiss-Prot	Medium
`O64468`	Arabidopsis thaliana	sp\|O64468\|GDL36_ARATH GDSL esterase/lipase At2g19050	36.800%	Swiss-Prot	Medium

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