TkA03G519110 | RubberDandelionOmics

Gene overview

TkA03G519110

Reference: TK1151 Chr: Chr03 Coordinates: 130232876-130234850 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1557 bp · TkA03G519110|TK1151|cDNA

ATGGGGAAACTGGTTGGATGGGAGCAGTCGGCATACATTGGAGGAAGAAGTATTCGAGATGGCCCGCTAATAATAAACGAGATTTTCACATGGGCAAAAAAGACAAAGAGGAAATTTATGTGCTTCAAGGTGGATTTTGACAAGGCGTTCGATTCCGTAAATTGGGGTTACTTGGATTCAATCTTGGGACATATGAAGTTTAGCACAAAGTGGAGAACTTGGATTCGGGGATGTCTAACTTCCGCTAGAGCATCAATCCT...

CDS

Download CDS FASTA

1557 bp · TkA03G519110|TK1151|CDS

ATGGGGAAACTGGTTGGATGGGAGCAGTCGGCATACATTGGAGGAAGAAGTATTCGAGATGGCCCGCTAATAATAAACGAGATTTTCACATGGGCAAAAAAGACAAAGAGGAAATTTATGTGCTTCAAGGTGGATTTTGACAAGGCGTTCGATTCCGTAAATTGGGGTTACTTGGATTCAATCTTGGGACATATGAAGTTTAGCACAAAGTGGAGAACTTGGATTCGGGGATGTCTAACTTCCGCTAGAGCATCAATCCT...

Protein

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518 aa · TkA03G519110|TK1151|PROTEIN

MGKLVGWEQSAYIGGRSIRDGPLIINEIFTWAKKTKRKFMCFKVDFDKAFDSVNWGYLDSILGHMKFSTKWRTWIRGCLTSARASILVNGSATNEFSFKRGVRQGDPLAPFLFIIAMEGLSVTMRSACGSNIFHGVKLPNHGPLLSHLMYADDVTFLGEWSDMNLVNLNRILRCFYLASGLKVNLNKSRIYGAGVEEIEIDSMASTMRCEAGKLPFTYLGLPIGANMKLAKNWASIVDKYRTRLSSWKARHLSFGGRAPR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G519110`
TK1151 ID	TkA03G519110
OH-1004 ID	LXL04_010712
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	55.200
Protein coverage (%)	TK1151 98.069 / OH-1004 63.837 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G519110

Location Chr03:130232876-130234850 (+)

Description Similar to Transposon TX1 uncharacterized 149 kDa protein

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`UniProt: P92555`	Uncharacterized mitochondrial protein AtMg01250.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_010712 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006310 DNA recombination Biological Process

GO:0032197 retrotransposition Biological Process

GO:0090304 nucleic acid metabolic process Biological Process

GO:0003676 nucleic acid binding Molecular Function

GO:0003723 RNA binding Molecular Function

GO:0003824 catalytic activity Molecular Function

GO:0003964 RNA-directed DNA polymerase activity Molecular Function

GO:0004519 endonuclease activity Molecular Function

GO:0004523 RNA-DNA hybrid ribonuclease activity Molecular Function

GO:0009036 type II site-specific deoxyribonuclease activity Molecular Function

GO:0016787 hydrolase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.557

Rank 1 · TkA03G519110 · TK1151

Nucleus0.315

Rank 2 · TkA03G519110 · TK1151

Cell membrane0.159

Rank 3 · TkA03G519110 · TK1151

Endoplasmic reticulum0.037

Rank 4 · TkA03G519110 · TK1151

Lysosome / Vacuole0.032

Rank 5 · TkA03G519110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00078RVT_19-223 aa

PF13966zf-RVT279-298 aa

PF13966zf-RVT355-374 aa

PF13966zf-RVT470-518 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G519110	`PF00078`	RVT_1	9	223	8.4e-22	78.7
TkA03G519110	`PF13966`	zf-RVT	279	298	0.00011	23.6
TkA03G519110	`PF13966`	zf-RVT	355	374	0.00011	23.6
TkA03G519110	`PF13966`	zf-RVT	470	518	0.00011	23.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P92555`	Arabidopsis thaliana	sp\|P92555\|M1250_ARATH Uncharacterized mitochondrial protein AtMg01250	33.600%	Swiss-Prot	Low

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