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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G516800
Reference: TK1151 Chr: Chr03 Coordinates: 129669925-129670827 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

810 bp · TkA03G516800|TK1151|cDNA

ATTAATCATCGCCCAATCTGGGACCCCTTTCTTCCTGAACAAAGTGTCGATCGATCTTCCAATAAAGAAATGCGGGATGATCATTACGATTACATGTTCAATGTTGTTTTGACTGGGACTGCATGTGTCGGTAAATCCAGTCTTTTATCACGATTCTCCAAGAACGAATTCAGCCTCGACACCAGATCCACCGTCGGAGTTGAATTTCAAACCCGTACCATCAACATCGATGGCAAGATCATCAAGGCCCAAATTTGGGA...

CDS

Download CDS FASTA

741 bp · TkA03G516800|TK1151|CDS

ATGCGGGATGATCATTACGATTACATGTTCAATGTTGTTTTGACTGGGACTGCATGTGTCGGTAAATCCAGTCTTTTATCACGATTCTCCAAGAACGAATTCAGCCTCGACACCAGATCCACCGTCGGAGTTGAATTTCAAACCCGTACCATCAACATCGATGGCAAGATCATCAAGGCCCAAATTTGGGACACCGCCGGTCGAGAAATATATCCAGCCGTAGCTAGCGCATACTATCGAGGTGCAGATTGTGTATTGAT...

Protein

Download Protein FASTA

247 aa · TkA03G516800|TK1151|PROTEIN

MRDDHYDYMFNVVLTGTACVGKSSLLSRFSKNEFSLDTRSTVGVEFQTRTINIDGKIIKAQIWDTAGREIYPAVASAYYRGADCVLIVYDITRANTFKPVELRLALVRHHTDQDVVVVMVGNKADQINLRAVKTEDAKAFAERENIGLFMETSALDTLNVENAFVKMLTERYHMVRKNEQNKDDVEMVKAKPKEQSTNVGGGDQDVGVTMISRETRRYSQSNGTITNIEPPRLFSDNFSIWKNRMIG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G516800
TK1151 IDTkA03G516800
OH-1004 IDLXL04_010222
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)54.800
Protein coverage (%)TK1151 98.785 / OH-1004 36.301
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G516800
LocationChr03:129669925-129670827 (+)
DescriptionSimilar to CBSX5: CBS domain-containing protein CBSX5
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g60860 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release
At1g28550 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release
At5g45750 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release
At2g33870 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010222 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0015031 protein transport Biological Process
GO:0016192 vesicle-mediated transport Biological Process
GO:0042546 cell wall biogenesis Biological Process
GO:0071456 cellular response to hypoxia Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005768 endosome Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0003924 GTPase activity Molecular Function
GO:0005525 GTP binding Molecular Function
KEGG gene cross-reference
ath:AT3G15060
ath:AT4G18430
ath:AT4G27460
ath:AT5G60860
nta:107770722
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.595
Rank 1 · TkA03G516800 · TK1151
Nucleus0.210
Rank 2 · TkA03G516800 · TK1151
Cell membrane0.200
Rank 3 · TkA03G516800 · TK1151
Golgi apparatus0.132
Rank 4 · TkA03G516800 · TK1151
Lysosome / Vacuole0.117
Rank 5 · TkA03G516800 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00025Arf10-140 aa
PF10662PduV-EutP10-102 aa
PF00071Ras12-170 aa
PF08477Roc12-125 aa
PF01926MMR_HSR112-119 aa
PF13521AAA_2812-32 aa
PF03193RsgA_GTPase12-32 aa
PF13238AAA_1812-34 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G516800PF00025Arf101404.7e-1039.9
TkA03G516800PF10662PduV-EutP101020.006417.0
TkA03G516800PF00071Ras121706.8e-50169.5
TkA03G516800PF08477Roc121256.3e-2691.7
TkA03G516800PF01926MMR_HSR1121193e-0731.3
TkA03G516800PF13521AAA_2812320.01816.0
TkA03G516800PF03193RsgA_GTPase12320.03114.8
TkA03G516800PF13238AAA_1812340.04215.1
TkA03G516800PF00009GTP_EFTU431706.9e-0523.2
TkA03G516800PF25174Beta-prop_THOC3822050.09812.4
TkA03G516800PF03193RsgA_GTPase831440.03114.8
TkA03G516800PF13521AAA_281151430.01816.0
TkA03G516800PF13238AAA_181711710.04215.1
TkA03G516800PF01926MMR_HSR11721793e-0731.3
TkA03G516800PF08477Roc2022146.3e-2691.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FJH0Arabidopsis thalianasp|Q9FJH0|RAA1F_ARATH Ras-related protein RABA1f58.700%Swiss-ProtHigh
Q9S810Arabidopsis thalianasp|Q9S810|RAA1I_ARATH Ras-related protein RABA1i58.200%Swiss-ProtHigh
Q9FK68Arabidopsis thalianasp|Q9FK68|RAA1C_ARATH Ras-related protein RABA1c61.700%Swiss-ProtHigh
Q1PEX3Arabidopsis thalianasp|Q1PEX3|RAA1H_ARATH Ras-related protein RABA1h57.700%Swiss-ProtHigh

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