TkA03G505600 | RubberDandelionOmics

Gene overview

TkA03G505600

Reference: TK1151 Chr: Chr03 Coordinates: 126799342-126809510 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1647 bp · TkA03G505600|TK1151|cDNA

ATGTCAAACGAAGAGTCTTCATTCATGGATCAATCTGTTATATCCCCACCAACCCTAGCCATTGCTCATCAAAACTGCTCCGCAGTTCTTGATTCTTCTCGTTACCCAGAATCTTTACACTTGTTGATTGAGTTTTTAAAATCATCAACACTTAACACAGCACTTACAGCCCATGCCAGAGTTTCAATCAAAGCTCTCACGAAAGCCTATACAACTTCACGATATAACTCAGCGAAGAACGTTGTTGAGTTTAATCTAGA...

CDS

Download CDS FASTA

1647 bp · TkA03G505600|TK1151|CDS

ATGTCAAACGAAGAGTCTTCATTCATGGATCAATCTGTTATATCCCCACCAACCCTAGCCATTGCTCATCAAAACTGCTCCGCAGTTCTTGATTCTTCTCGTTACCCAGAATCTTTACACTTGTTGATTGAGTTTTTAAAATCATCAACACTTAACACAGCACTTACAGCCCATGCCAGAGTTTCAATCAAAGCTCTCACGAAAGCCTATACAACTTCACGATATAACTCAGCGAAGAACGTTGTTGAGTTTAATCTAGA...

Protein

Download Protein FASTA

548 aa · TkA03G505600|TK1151|PROTEIN

MSNEESSFMDQSVISPPTLAIAHQNCSAVLDSSRYPESLHLLIEFLKSSTLNTALTAHARVSIKALTKAYTTSRYNSAKNVVEFNLETGKRTAISKSPFTKLLNLSVDQHLIDPDTVSSVDMINTFNQMGHTPVLTRLSAFKKNKLHSVWSCLFTILFKCFAERQTGTDSAKKTIAHFPELQIGKLTVKSDDFCEFIGKIPKEMLSKLDSENELRKAYQLANPLPYLLRDIPNDIQQLIEKQKVVPRTQGKRKKTHAATS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G505600`
TK1151 ID	TkA03G505600
OH-1004 ID	LXL04_037282
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	46.900
Protein coverage (%)	TK1151 85.766 / OH-1004 40.256 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA03G505600`
Location	Chr03:126799342-126809510 (+)
Description	Similar to EEF1AKMT2: EEF1A lysine methyltransferase 2
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_037282` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006479 protein methylation Biological Process GO:0018022 peptidyl-lysine methylation Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0008168 methyltransferase activity Molecular Function GO:0016279 protein-lysine N-methyltransferase activity Molecular Function
KEGG gene cross-reference	dre:503749 hsa:399818 mmu:72096 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.810

Rank 1 · TkA03G505600 · TK1151

Cytoplasm0.255

Rank 2 · TkA03G505600 · TK1151

Mitochondrion0.030

Rank 3 · TkA03G505600 · TK1151

Cell membrane0.022

Rank 4 · TkA03G505600 · TK1151

Extracellular0.014

Rank 5 · TkA03G505600 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22937PDXDC1-like_cen262-86 aa

PF27174YeeD73-92 aa

PF22937PDXDC1-like_cen2445-471 aa

PF22937PDXDC1-like_cen2472-505 aa

PF05387Chorion_3473-505 aa

PF27174YeeD475-541 aa

PF22937PDXDC1-like_cen2508-534 aa

PF05387Chorion_3512-542 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G505600	`PF22937`	PDXDC1-like_cen2	62	86	5.2	8.0
TkA03G505600	`PF27174`	YeeD	73	92	0.38	11.9
TkA03G505600	`PF22937`	PDXDC1-like_cen2	445	471	5.2	8.0
TkA03G505600	`PF22937`	PDXDC1-like_cen2	472	505	5.2	8.0
TkA03G505600	`PF05387`	Chorion_3	473	505	0.015	15.5
TkA03G505600	`PF27174`	YeeD	475	541	0.38	11.9
TkA03G505600	`PF22937`	PDXDC1-like_cen2	508	534	5.2	8.0
TkA03G505600	`PF05387`	Chorion_3	512	542	0.015	15.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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