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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G499970
Reference: TK1151 Chr: Chr03 Coordinates: 125532427-125537100 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3417 bp · TkA03G499970|TK1151|cDNA

ATGTATTTAGATCAAAGAAAGGCAAATAAGCTGCAAAACTCTTCATACGCAAATTCTAATCCTCAAATACACAGCCCGTGTATTGCATCAACCAGTAGACAATTCAATTTATTACCCACTCTATCAACTTCGACTCCTTTATCTGAAATTATTTCAAATTCATCTTTTCAAAAGTTATCTTCTGGAAAGCATAATTTCAAAAGGAAGAAGACAGATTTGGCTGATATACCAATATTTGACTTATCATCTGACGACGAAGA...

CDS

Download CDS FASTA

3417 bp · TkA03G499970|TK1151|CDS

ATGTATTTAGATCAAAGAAAGGCAAATAAGCTGCAAAACTCTTCATACGCAAATTCTAATCCTCAAATACACAGCCCGTGTATTGCATCAACCAGTAGACAATTCAATTTATTACCCACTCTATCAACTTCGACTCCTTTATCTGAAATTATTTCAAATTCATCTTTTCAAAAGTTATCTTCTGGAAAGCATAATTTCAAAAGGAAGAAGACAGATTTGGCTGATATACCAATATTTGACTTATCATCTGACGACGAAGA...

Protein

Download Protein FASTA

1138 aa · TkA03G499970|TK1151|PROTEIN

MYLDQRKANKLQNSSYANSNPQIHSPCIASTSRQFNLLPTLSTSTPLSEIISNSSFQKLSSGKHNFKRKKTDLADIPIFDLSSDDEEIDEPIVDDRILPISKDYLDHGDQIIECMVCKAKLWKKEALRRKKVNNKTCFSVCCSYGKVQLPEFKEPPPEYIKLFRSLHPKSNNFMKNIRCFNSMFSFTSMGGKIDKSINKVKGPYVFRLSGQNYHSMGSLLPDVGETPKFSQLYIYDTENEEVNRQNVFGSNKEGSKNKTD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G499970
TK1151 IDTkA03G499970
OH-1004 IDLXL04_033271
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)99.400
Protein coverage (%)TK1151 99.121 / OH-1004 57.317
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G499970
LocationChr03:125532427-125537100 (+)
DescriptionSimilar to Pif1: ATP-dependent DNA helicase PIF1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_033271 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000722 telomere maintenance via recombination Biological Process
GO:0000723 telomere maintenance Biological Process
GO:0000724 double-strand break repair via homologous recombination Biological Process
GO:0000727 double-strand break repair via break-induced replication Biological Process
GO:0001117 protein-DNA-RNA complex disassembly Biological Process
GO:0006260 DNA replication Biological Process
GO:0006281 DNA repair Biological Process
GO:0006289 nucleotide-excision repair Biological Process
GO:0006310 DNA recombination Biological Process
GO:0007004 telomere maintenance via telomerase Biological Process
GO:0007140 male meiotic nuclear division Biological Process
GO:0009555 pollen development Biological Process
KEGG gene cross-reference
cal:CAALFM_CR07360WA
dosa:Os02g0776800
hsa:80119
mmu:208084
rno:367645
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.939
Rank 1 · TkA03G499970 · TK1151
Cytoplasm0.142
Rank 2 · TkA03G499970 · TK1151
Mitochondrion0.036
Rank 3 · TkA03G499970 · TK1151
Cell membrane0.012
Rank 4 · TkA03G499970 · TK1151
Extracellular0.007
Rank 5 · TkA03G499970 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14214Helitron_like_N398-578 aa
PF23343REP_ORF2-G2P453-470 aa
PF05840Phage_GPA484-598 aa
PF23343REP_ORF2-G2P504-592 aa
PF20199RepSA564-580 aa
PF23343REP_ORF2-G2P696-718 aa
PF20199RepSA703-721 aa
PF05840Phage_GPA704-719 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G499970PF14214Helitron_like_N3985783.2e-59201.1
TkA03G499970PF23343REP_ORF2-G2P4534701.4e-0629.2
TkA03G499970PF05840Phage_GPA4845980.07412.8
TkA03G499970PF23343REP_ORF2-G2P5045921.4e-0629.2
TkA03G499970PF20199RepSA5645800.1811.6
TkA03G499970PF23343REP_ORF2-G2P6967181.4e-0629.2
TkA03G499970PF20199RepSA7037210.1811.6
TkA03G499970PF05840Phage_GPA7047190.07412.8
TkA03G499970PF07313AmiA-like8609520.03814.2
TkA03G499970PF00225Kinesin102310740.0214.6
TkA03G499970PF05970PIF1103911071.6e-2694.0
TkA03G499970PF13604AAA_30103911000.002118.6
TkA03G499970PF13191AAA_16104810890.02615.7
TkA03G499970PF00005ABC_tran105510920.3712.1
TkA03G499970PF13481AAA_25105610880.05713.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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