TkA03G495340 | RubberDandelionOmics

Gene overview

TkA03G495340

Reference: TK1151 Chr: Chr03 Coordinates: 124347534-124348659 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

735 bp · TkA03G495340|TK1151|cDNA

ATGGGCCCCACCCTCAAATGGATTCAACGTCTTAAGATATGTGTTGGGGTTGCATGTGGCTTGCACTACCTTCATGATCCCAAAGTTCCAGATTTTGGCCTACAAGGCATCAACCATTGTTATATCGAAAGTGGCAAAATTTTGTTAGACGCGAATTGGAATGCCAAAATTGCTGATTTTGGTCTACCCGGACATGACACAATGGATGTTTCGAAAGGTGAAGGTACTCTTGGCTATTGTGATCCAACAGGTTATAAAAG...

CDS

Download CDS FASTA

735 bp · TkA03G495340|TK1151|CDS

ATGGGCCCCACCCTCAAATGGATTCAACGTCTTAAGATATGTGTTGGGGTTGCATGTGGCTTGCACTACCTTCATGATCCCAAAGTTCCAGATTTTGGCCTACAAGGCATCAACCATTGTTATATCGAAAGTGGCAAAATTTTGTTAGACGCGAATTGGAATGCCAAAATTGCTGATTTTGGTCTACCCGGACATGACACAATGGATGTTTCGAAAGGTGAAGGTACTCTTGGCTATTGTGATCCAACAGGTTATAAAAG...

Protein

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244 aa · TkA03G495340|TK1151|PROTEIN

MGPTLKWIQRLKICVGVACGLHYLHDPKVPDFGLQGINHCYIESGKILLDANWNAKIADFGLPGHDTMDVSKGEGTLGYCDPTGYKRLILTEESDVYSFGVILFEVLCSRPCVDWNYTDERRSLPILVKKRNQEQMPHSIIDVNLWQQMDQECFDTFVKLALQCLEKERKKRPTMVSVIRRLKFALILQEIFELNEEERRSSFSPNQVLLDTKSQETESSSSLEFRTGSFNALRFQRRTTEDVG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G495340`
TK1151 ID	TkA03G495340
OH-1004 ID	LXL04_010074
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.600
Protein coverage (%)	TK1151 92.623 / OH-1004 31.921 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G495340

Location Chr03:124347534-124348659 (+)

Description Similar to HERK1: Receptor-like protein kinase HERK 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g24010`	Probable receptor-like protein kinase At5g24010.	No verified direct reference in this release
`At3g46290`	Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.	Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106
`At2g39360`	Probable receptor-like protein kinase At2g39360.	No verified direct reference in this release
`At1g24030`	May be involved in plant defense signaling.	No verified direct reference in this release
`At1g66880`	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.4.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010074 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009741 response to brassinosteroid Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0043680 filiform apparatus Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0004714 transmembrane receptor protein tyrosine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT3G46290

ath:AT5G59700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.487

Rank 1 · TkA03G495340 · TK1151

Cell membrane0.354

Rank 2 · TkA03G495340 · TK1151

Nucleus0.295

Rank 3 · TkA03G495340 · TK1151

Endoplasmic reticulum0.044

Rank 4 · TkA03G495340 · TK1151

Golgi apparatus0.041

Rank 5 · TkA03G495340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714PK_Tyr_Ser-Thr5-182 aa

PF00069Pkinase12-179 aa

PF06558SecM136-148 aa

PF06558SecM177-212 aa

PF12944HAV_VP202-243 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G495340	`PF07714`	PK_Tyr_Ser-Thr	5	182	9.2e-17	61.9
TkA03G495340	`PF00069`	Pkinase	12	179	3.2e-15	57.0
TkA03G495340	`PF06558`	SecM	136	148	0.08	13.6
TkA03G495340	`PF06558`	SecM	177	212	0.08	13.6
TkA03G495340	`PF12944`	HAV_VP	202	243	0.19	12.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FLW0`	Arabidopsis thaliana	sp\|Q9FLW0\|Y5241_ARATH Probable receptor-like protein kinase At5g24010	42.400%	Swiss-Prot	Medium
`Q9LX66`	Arabidopsis thaliana	sp\|Q9LX66\|HERK_ARATH Receptor-like protein kinase HERK 1	41.500%	Swiss-Prot	Medium
`O80623`	Arabidopsis thaliana	sp\|O80623\|Y2393_ARATH Probable receptor-like protein kinase At2g39360	39.600%	Swiss-Prot	Medium
`Q84M95`	Arabidopsis thaliana	sp\|Q84M95\|PBL28_ARATH Probable serine/threonine-protein kinase PBL28	35.400%	Swiss-Prot	Medium
`F4HQ17`	Arabidopsis thaliana	sp\|F4HQ17\|LRL14_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.4	35.200%	Swiss-Prot	Medium

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