TkA03G469470 | RubberDandelionOmics

Gene overview

TkA03G469470

Reference: TK1151 Chr: Chr03 Coordinates: 117331772-117333614 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1458 bp · TkA03G469470|TK1151|cDNA

AGTCTCTCTCCCTCTCTACCTACTTTAAGATGAGACAATAATCTCTTAGTTTTTTCTCCTTGTCTTTCAACTCCTTTCTCTTTAACCTCTTCATTCATCTTCTCTCCTTCACAATCACACACCACCTTCATTTCATCAATGGAGTTCGACCTCCAAAACCTCTATCCCAAGACTTCAAACATCTATTTTCTCCATGGAATCCGATCACCTTCCATTGTTGAACTCAGATCTTGACTCCGATCATCATCTCCGGCAACAAA...

CDS

Download CDS FASTA

534 bp · TkA03G469470|TK1151|CDS

ATGATACTTGGAGCTCTTCAATGGCGAATGCGTTCCATTACTCCTTTTGCGTTCATCAATTTCTTCTTCTCTTTCTTCAAATTCGGAACGGCATCGTTCCATGATAACTGTAATGCGGATGACGATGTTCACTATCATCATCATCAAGCTCTTAAAGATCGAGCCACTGAAATCATCTTCAAAGCTCAGATTGACTTAAAGCTTATTGGTTTCAAGCCATCGCTCATTGCAGCTTCTGCTCTTCTATGTGCTTGTCATGA...

Protein

Download Protein FASTA

177 aa · TkA03G469470|TK1151|PROTEIN

MILGALQWRMRSITPFAFINFFFSFFKFGTASFHDNCNADDDVHYHHHQALKDRATEIIFKAQIDLKLIGFKPSLIAASALLCACHELSPLQFPYFKNSISSCSYVNEDELSKCHSVVQEVAMDGYESMLGCKTPINVLDLDYSSSEDTHSKTDEDEKRGLKRLKMSTFSETPFQLS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G469470`
TK1151 ID	TkA03G469470
OH-1004 ID	LXL04_009763
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 59.197 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G469470

Location Chr03:117331772-117333614 (+)

Description Similar to CYCD6-1: Putative cyclin-D6-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g03270`	Putative cyclin-D6-1.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0556000`	Cyclin-D6-1.	No verified direct reference in this release
`Os09g0382300`	Cyclin-D2-1.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009763 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000082 G1/S transition of mitotic cell cycle Biological Process

GO:0009744 response to sucrose Biological Process

GO:0010440 stomatal lineage progression Biological Process

GO:0051301 cell division Biological Process

GO:0000307 cyclin-dependent protein kinase holoenzyme complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity Molecular Function

KEGG gene cross-reference

ath:AT1G70210

ath:AT4G03270

ath:AT5G65420

dosa:Os07g0556000

dosa:Os09g0382300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.971

Rank 1 · TkA03G469470 · TK1151

Cytoplasm0.092

Rank 2 · TkA03G469470 · TK1151

Cell membrane0.022

Rank 3 · TkA03G469470 · TK1151

Endoplasmic reticulum0.011

Rank 4 · TkA03G469470 · TK1151

Plastid0.009

Rank 5 · TkA03G469470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02984Cyclin_C14-122 aa

PF00382TFIIB50-116 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G469470	`PF02984`	Cyclin_C	14	122	2.7e-08	34.6
TkA03G469470	`PF00382`	TFIIB	50	116	0.021	15.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZR04`	Arabidopsis thaliana	sp\|Q9ZR04\|CCD61_ARATH Putative cyclin-D6-1	43.400%	Swiss-Prot	Medium
`Q69S43`	Oryza sativa subsp. japonica	sp\|Q69S43\|CCD61_ORYSJ Cyclin-D6-1	31.400%	Swiss-Prot	Medium
`Q0J233`	Oryza sativa subsp. japonica	sp\|Q0J233\|CCD21_ORYSJ Cyclin-D2-1	26.400%	Swiss-Prot	Low

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