TkA03G466400 | RubberDandelionOmics

Gene overview

TkA03G466400

Reference: TK1151 Chr: Chr03 Coordinates: 116449902-116453658 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2697 bp · TkA03G466400|TK1151|cDNA

ATGACGACTTGGGTCGGGTTGTTTTTGGTTACTGTAACGTTCTCAGTTGTGGTTTCCGACAACGATTCTGTGAACATTGGAGCCATTCTAAACTCGAAAACGATCAATGGGAAGGTCTCAACGATTGCCATGAAAGCTGCCGTAGATGATGTCAACTCTGATCCCGCCATTTTACCAGGCAAAAGATTGAGTCTTTCAATTCATGATGCAAACTTCAGTGGCTTCCTCAGCATCGTTGGTGCATTAAGATACATGGAGAT...

CDS

Download CDS FASTA

2697 bp · TkA03G466400|TK1151|CDS

ATGACGACTTGGGTCGGGTTGTTTTTGGTTACTGTAACGTTCTCAGTTGTGGTTTCCGACAACGATTCTGTGAACATTGGAGCCATTCTAAACTCGAAAACGATCAATGGGAAGGTCTCAACGATTGCCATGAAAGCTGCCGTAGATGATGTCAACTCTGATCCCGCCATTTTACCAGGCAAAAGATTGAGTCTTTCAATTCATGATGCAAACTTCAGTGGCTTCCTCAGCATCGTTGGTGCATTAAGATACATGGAGAT...

Protein

Download Protein FASTA

898 aa · TkA03G466400|TK1151|PROTEIN

MTTWVGLFLVTVTFSVVVSDNDSVNIGAILNSKTINGKVSTIAMKAAVDDVNSDPAILPGKRLSLSIHDANFSGFLSIVGALRYMEIDTVAVIGPQSSVMAHVLSNLANELHVPFLSFTALDPSLSPLQYPYFIQTAPNDLYQMTAIAEIVTYFNYREATAIFTDDDQFRNTISILGDLLSSRRCKLSYKAPLPPDSSLSPQDIINTLLKVRALESRVIIVNTYSQTGLSVFENAKRLGMMKKGYVWIATTWLSAVLDSR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G466400`
TK1151 ID	TkA03G466400
OH-1004 ID	LXL04_013908
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	55.500
Protein coverage (%)	TK1151 95.434 / OH-1004 37.299 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G466400

Location Chr03:116449902-116453658 (+)

Description Similar to GLR3.6: Glutamate receptor 3.6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g35290`	Glutamate-gated receptor that probably acts as a non-selective cation channel (Probable).	Overexpression of the AtGluR2 gene encoding an Arabidopsis homolog of mammalian glutamate receptors impairs calcium utilization and sensitivity to ionic stress in transgenic plants.2001 · DOI: 10.1093/pcp/pce008 Interacting glutamate receptor-like proteins in Phloem regulate lateral root initiation in Arabidopsis.2013 · DOI: 10.1105/tpc.113.110668
`At2g17260`	Glutamate-gated receptor that probably acts as a non- selective cation channel.	De-regulated expression of the plant glutamate receptor homolog AtGLR3.1 impairs long-term Ca2+-programmed stomatal closure.2009 · DOI: 10.1111/j.1365-313x.2009.03789.x
`At1g42540`	Glutamate-gated receptor that probably acts as a non-selective cation channel, at least in roots and hypocotyls (Probable).	Calcium entry mediated by GLR3.3, an Arabidopsis glutamate receptor with a broad agonist profile.2006 · DOI: 10.1104/pp.106.088989 Glutamate receptor subtypes evidenced by differences in desensitization and dependence on the GLR3.3 and GLR3.4 genes.2008 · DOI: 10.1104/pp.107.108134 Glutamate receptor-like channel3.3 is involved in mediating glutathione-triggered cytosolic calcium transients, transcriptional changes, and innate immunity responses in Arabidopsis.2013 · DOI: 10.1104/pp.113.217208 Involvement of the glutamate receptor AtGLR3.3 in plant defense signaling and resistance to Hyaloperonospora arabidopsidis.2013 · DOI: 10.1111/tpj.12311 GLUTAMATE RECEPTOR-LIKE genes mediate leaf-to-leaf wound signalling.2013 · DOI: 10.1038/nature12478 Real-time, in vivo intracellular recordings of caterpillar-induced depolarization waves in sieve elements using aphid electrodes.2014 · DOI: 10.1111/nph.12807
`At3g51480`	Glutamate-gated receptor that probably acts as a non- selective cation channel.	GLUTAMATE RECEPTOR-LIKE genes mediate leaf-to-leaf wound signalling.2013 · DOI: 10.1038/nature12478

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0585200`	Glutamate-gated receptor that probably acts as a non-selective cation channel.	A rice glutamate receptor-like gene is critical for the division and survival of individual cells in the root apical meristem.2006 · DOI: 10.1105/tpc.105.037713

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013908 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006816 calcium ion transport Biological Process

GO:0006874 intracellular calcium ion homeostasis Biological Process

GO:0007267 cell-cell signaling Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009611 response to wounding Biological Process

GO:0009630 gravitropism Biological Process

GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway Biological Process

GO:0019722 calcium-mediated signaling Biological Process

GO:0045087 innate immune response Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0071230 cellular response to amino acid stimulus Biological Process

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G42540

ath:AT3G51480

osa:124544569

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.839

Rank 1 · TkA03G466400 · TK1151

Cytoplasm0.073

Rank 2 · TkA03G466400 · TK1151

Endoplasmic reticulum0.072

Rank 3 · TkA03G466400 · TK1151

Lysosome / Vacuole0.040

Rank 4 · TkA03G466400 · TK1151

Nucleus0.030

Rank 5 · TkA03G466400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00060Lig_chan9-41 aa

PF13458Peripla_BP_635-322 aa

PF01094ANF_receptor42-394 aa

PF10613Lig_chan-Glu_bd471-560 aa

PF00497SBP_bac_3477-793 aa

PF00060Lig_chan578-823 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G466400	`PF00060`	Lig_chan	9	41	2.2e-36	125.6
TkA03G466400	`PF13458`	Peripla_BP_6	35	322	5.6e-15	56.5
TkA03G466400	`PF01094`	ANF_receptor	42	394	1.9e-80	271.3
TkA03G466400	`PF10613`	Lig_chan-Glu_bd	471	560	7.7e-07	29.9
TkA03G466400	`PF00497`	SBP_bac_3	477	793	6.7e-10	39.5
TkA03G466400	`PF00060`	Lig_chan	578	823	2.2e-36	125.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93YT1`	Arabidopsis thaliana	sp\|Q93YT1\|GLR32_ARATH Glutamate receptor 3.2	61.900%	Swiss-Prot	High
`Q7XJL2`	Arabidopsis thaliana	sp\|Q7XJL2\|GLR31_ARATH Glutamate receptor 3.1	60.700%	Swiss-Prot	High
`Q9C8E7`	Arabidopsis thaliana	sp\|Q9C8E7\|GLR33_ARATH Glutamate receptor 3.3	56.800%	Swiss-Prot	High
`Q84W41`	Arabidopsis thaliana	sp\|Q84W41\|GLR36_ARATH Glutamate receptor 3.6	52.700%	Swiss-Prot	High
`Q7XP59`	Oryza sativa subsp. japonica	sp\|Q7XP59\|GLR31_ORYSJ Glutamate receptor 3.1	54.200%	Swiss-Prot	High

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