TkA03G463340 | RubberDandelionOmics

Gene overview

TkA03G463340

Reference: TK1151 Chr: Chr03 Coordinates: 115643107-115644693 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1083 bp · TkA03G463340|TK1151|cDNA

ATGTCGGCTATTCTTTCATTTATTTTCGTGGGAACTGTTCTCACCATATTTCAAATTTCAAGTGCCATAGAGACATCAAATGGCGCACCACCCCCAATTTTCATATTTGGTGACTCAACAGCTGATGTTGGAACAAACTCTTTCTTGCCCATGACCAAAATACATGCCGATTTTCCTCACAATGGGATTGATTTTCTCAATTCAAGACCTACCGGACGGTTTAGCAACGGCTTCAATACTGCTGATTTTCTATGTAAGCT...

CDS

Download CDS FASTA

1083 bp · TkA03G463340|TK1151|CDS

ATGTCGGCTATTCTTTCATTTATTTTCGTGGGAACTGTTCTCACCATATTTCAAATTTCAAGTGCCATAGAGACATCAAATGGCGCACCACCCCCAATTTTCATATTTGGTGACTCAACAGCTGATGTTGGAACAAACTCTTTCTTGCCCATGACCAAAATACATGCCGATTTTCCTCACAATGGGATTGATTTTCTCAATTCAAGACCTACCGGACGGTTTAGCAACGGCTTCAATACTGCTGATTTTCTATGTAAGCT...

Protein

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360 aa · TkA03G463340|TK1151|PROTEIN

MSAILSFIFVGTVLTIFQISSAIETSNGAPPPIFIFGDSTADVGTNSFLPMTKIHADFPHNGIDFLNSRPTGRFSNGFNTADFLCKLMGRQRSPQPYLFLLKAGLTKRMFSGVNFASGASGLLDVTGKDLNILSMSDQIKQFETVCSILTLVKGPEAAKDILVKSLIAISIGSNDIFGYFETQSTMEPLVFIDSLMTAYEYHINAIYELGARKFGIISVPPIGCCPSQRIHNTTGGCLEIENTFARAFYTSLDALLKKLA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G463340`
TK1151 ID	TkA03G463340
OH-1004 ID	LXL04_009696
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.900
Protein coverage (%)	TK1151 100.000 / OH-1004 95.238 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G463340

Location Chr03:115643107-115644693 (-)

Description Similar to At5g55050: GDSL esterase/lipase At5g55050

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g55050`	GDSL esterase/lipase At5g55050.	No verified direct reference in this release
`At1g71250`	GDSL esterase/lipase At1g71250.	No verified direct reference in this release
`At2g23540`	GDSL esterase/lipase At2g23540.	No verified direct reference in this release
`At5g41890`	GDSL esterase/lipase At5g41890.	No verified direct reference in this release
`At5g37690`	GDSL esterase/lipase At5g37690.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009696 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0016298 lipase activity Molecular Function

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT1G71250

ath:AT2G23540

ath:AT4G28780

ath:AT5G08460

ath:AT5G55050

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.420

Rank 1 · TkA03G463340 · TK1151

Lysosome / Vacuole0.156

Rank 2 · TkA03G463340 · TK1151

Endoplasmic reticulum0.119

Rank 3 · TkA03G463340 · TK1151

Cytoplasm0.108

Rank 4 · TkA03G463340 · TK1151

Cell membrane0.103

Rank 5 · TkA03G463340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657Lipase_GDSL33-339 aa

PF15300INT_SG_DDX_CT_C140-167 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G463340	`PF00657`	Lipase_GDSL	33	339	2.4e-27	97.2
TkA03G463340	`PF15300`	INT_SG_DDX_CT_C	140	167	0.17	12.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FIA1`	Arabidopsis thaliana	sp\|Q9FIA1\|GDL87_ARATH GDSL esterase/lipase At5g55050	36.300%	Swiss-Prot	Medium
`Q9FVV1`	Arabidopsis thaliana	sp\|Q9FVV1\|GDL28_ARATH GDSL esterase/lipase At1g71250	34.200%	Swiss-Prot	Medium
`O80470`	Arabidopsis thaliana	sp\|O80470\|GDL38_ARATH GDSL esterase/lipase At2g23540	36.400%	Swiss-Prot	Medium
`Q9FJ25`	Arabidopsis thaliana	sp\|Q9FJ25\|GDL81_ARATH GDSL esterase/lipase At5g41890	34.700%	Swiss-Prot	Medium
`Q9FHQ1`	Arabidopsis thaliana	sp\|Q9FHQ1\|GDL80_ARATH GDSL esterase/lipase At5g37690	32.700%	Swiss-Prot	Medium

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