TkA03G461370 | RubberDandelionOmics

Gene overview

TkA03G461370

Reference: TK1151 Chr: Chr03 Coordinates: 115197108-115201214 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2907 bp · TkA03G461370|TK1151|cDNA

TTTCTCTTCTCTCTATCTCTGTAACCCACCTCCATTTTTGTCTCAAGCTCCAACATTTTTCTTCAAAAACGATTAACGCGACATGGGTTTCTCTCGGGGTTCATCAAACGAGTTTTTTTTGTATAGCTAAAACTCACCCAGATCTTCAAAATCGAAATGTATCTGTTTTTCTCCTGTAAAAATCAAAACTTTCTTGAACTCCCTCTGAAAACCTCCAAGAAAGATACCTTTTCTACGCAAACCCGTTCCTTTTCTACCAA...

CDS

Download CDS FASTA

2211 bp · TkA03G461370|TK1151|CDS

ATGGGGTGTGTTGCTACAAAGTTAGAAGACGAAGAAGAGGTGGTGTCTATCTGTAGAGAGAGAAAACATTTCTTGAAGTTAGCCGTAGAGAAAAGGTATGCTCTCGCAGAAGCTCACTTTAGGTACTGTCAATCCGTCTATGGCGTTTCAGCAGCTATACGACTATTCGTTGCCCGACACTCTTCATCTTCTTCGCCATTTCTCATCACTTTTCCACCGCCATCTCCCCCAAAAGAAAACAAGGTCGTTTCAAACCCTTT...

Protein

Download Protein FASTA

736 aa · TkA03G461370|TK1151|PROTEIN

MGCVATKLEDEEEVVSICRERKHFLKLAVEKRYALAEAHFRYCQSVYGVSAAIRLFVARHSSSSSPFLITFPPPSPPKENKVVSNPLFLQQNSTDEPIKNNKDAINACASGSCSCTSSTTSSEEDEEREEKFKREREVEREREHEESCGYFYMGMQMPMHMHMPPPVSNIPSMPSPQREFGWDFFDPFVTMRPEIISGYTRNSDDDLRVVREEEGIPELEEEVERVEEVKKKVVMRSEEKEQCLNLKQQEVEVVGTVECA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G461370`
TK1151 ID	TkA03G461370
OH-1004 ID	LXL04_009669
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G461370

Location Chr03:115197108-115201214 (-)

Description Similar to REL2: Protein ROLLING AND ERECT LEAF 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g51290`	Required for the coordination of cell differentiation and cell elongation in the root tip.	No verified direct reference in this release
`At3g60320`	Required for nitrate signaling.	The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators.2016 · DOI: 10.1105/tpc.15.00567

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0562700`	Involved in the regulation of leaf shape formation.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009669 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0010073 meristem maintenance Biological Process

GO:0010167 response to nitrate Biological Process

GO:0015706 nitrate transmembrane transport Biological Process

GO:0030154 cell differentiation Biological Process

GO:0071249 cellular response to nitrate Biological Process

GO:0071705 nitrogen compound transport Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT3G51290

ath:AT3G60320

dosa:Os10g0562700

osa:4349394

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.474

Rank 1 · TkA03G461370 · TK1151

Cell membrane0.345

Rank 2 · TkA03G461370 · TK1151

Nucleus0.296

Rank 3 · TkA03G461370 · TK1151

Endoplasmic reticulum0.047

Rank 4 · TkA03G461370 · TK1151

Golgi apparatus0.040

Rank 5 · TkA03G461370 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04783DUF6301-60 aa

PF30815DUF874775-129 aa

PF04782DUF632112-133 aa

PF04782DUF632227-252 aa

PF04782DUF632283-606 aa

PF30815DUF8747301-368 aa

PF30815DUF8747455-484 aa

PF04783DUF630576-597 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G461370	`PF04783`	DUF630	1	60	1.7e-21	76.8
TkA03G461370	`PF30815`	DUF8747	75	129	1.1	9.8
TkA03G461370	`PF04782`	DUF632	112	133	7.3e-111	371.2
TkA03G461370	`PF04782`	DUF632	227	252	7.3e-111	371.2
TkA03G461370	`PF04782`	DUF632	283	606	7.3e-111	371.2
TkA03G461370	`PF30815`	DUF8747	301	368	1.1	9.8
TkA03G461370	`PF30815`	DUF8747	455	484	1.1	9.8
TkA03G461370	`PF04783`	DUF630	576	597	1.7e-21	76.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`A0A178VBJ0`	Arabidopsis thaliana	sp\|A0A178VBJ0\|APSR1_ARATH Protein ALTERED PHOSPHATE STARVATION RESPONSE 1	30.500%	Swiss-Prot	Medium
`Q93YU8`	Arabidopsis thaliana	sp\|Q93YU8\|NRG2_ARATH Nitrate regulatory gene2 protein	30.200%	Swiss-Prot	Medium
`Q9AQW1`	Oryza sativa subsp. japonica	sp\|Q9AQW1\|REL2_ORYSJ Protein ROLLING AND ERECT LEAF 2	32.500%	Swiss-Prot	Medium

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